Dbfetch

ID   AK146518; SV 1; linear; mRNA; HTC; MUS; 2045 BP.
XX
AC   AK146518;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched
DE   library, clone:I920019O09 product:Ribonuclease HI large subunit (EC
DE   3.1.26.-) (RNase HI large subunit), full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-2045
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; cd7e4db3101faa267ba540fe6165d340.
DR   Ensembl-Gn; ENSMUSG00000052926; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109736; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109738; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000147812; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=I920019O09
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FH   Key             Location/Qualifiers
FH
FT   source          1..2045
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="16 days embryo"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="I920019O09"
FT                   /tissue_type="kidney"
FT                   /db_xref="taxon:10090"
FT   CDS             27..932
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="Ribonuclease HI large subunit (EC 3.1.26.-) (RNase
FT                   HI large subunit) (UniProt|Q9CWY8, evidence: FASTY,
FT                   99.7%ID, 100%length, match=903)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q9CWY8"
FT                   /db_xref="InterPro:IPR001352"
FT                   /db_xref="InterPro:IPR004649"
FT                   /db_xref="InterPro:IPR012337"
FT                   /db_xref="InterPro:IPR023160"
FT                   /db_xref="InterPro:IPR024567"
FT                   /db_xref="MGI:MGI:1916974"
FT                   /db_xref="PDB:3KIO"
FT                   /db_xref="PDB:3P5J"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9CWY8"
FT                   /protein_id="BAE27230.1"
FT                   /translation="MDLSELERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPM
FT                   VYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLIST
FT                   SMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEV
FT                   TVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLR
FT                   KHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEEDPERPGKITSYFSQGPQTC
FT                   RPQAPHRYFQERGLEAASSL"
FT   regulatory      2032..2037
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      2045
FT                   /note="putative"
XX
SQ   Sequence 2045 BP; 460 A; 479 C; 557 G; 549 T; 0 other;
     gaattgttgg ctgtcgcaga ggcagcatgg atctcagcga gctggagagg gacaatacgg        60
     gtcgttgtcg tctgagttct cctgtacctg ctgtgtgtct caaggagccg tgcgttctgg       120
     gcgtggatga agcgggccga ggccctgtgc ttggtcccat ggtctacgcc atctgttact       180
     gccccctgtc tcgcttggca gatctggagg ccctgaaagt ggcagactct aagaccttga       240
     cagagaacga gcgggagagg ctctttgcga aaatggagga ggatggagac tttgtgggtt       300
     gggctttgga cgtcctgtct ccaaacctga tctctaccag catgcttggg cgagtcaagt       360
     acaacctcaa ctccctgtca cacgatacag ctgcggggct gatacagtac gcactggacc       420
     agaatgtgaa tgtcactcag gtatttgtgg acactgtagg aatgccagag acataccagg       480
     ctcgattaca acagcacttt cccgggatag aggtgacagt caaggccaaa gctgactccc       540
     tgttccctgt ggtcagtgct gccagcatct ttgccaaggt ggcccgagac aaggctgtga       600
     agaactggca gtttgtggaa aatttacagg atctggactc cgattatggc tcaggctatc       660
     ccaatgatcc caagaccaaa gcctggctga ggaaacatgt ggaccctgtg tttggctttc       720
     cccagtttgt acggttcagt tggagcacag cccaggccat cctggagaag gaggcagaag       780
     atgtcatttg ggaggactca gaagctgagg aggatcctga aagaccggga aaaatcacct       840
     cctacttcag ccagggcccg cagacctgcc gccctcaggc cccccacaga tacttccagg       900
     agcgaggcct ggaggcagcc agcagcctct aggagcccac gtgtgcacca cctgcccttc       960
     taacccagga ataaaagctg ttcaagaagt ggaccgagtg ctttgtggct aaggtctggt      1020
     agcagtgcct gtggccagca gctgattcat caaacaaaat aggcatttct agattggtga      1080
     cgtttgcttt ttttttaaag aatgatttat gtatgtaagt acactgtagc tgtcttcaga      1140
     cacggcagaa gagggcatca gatcccatta tagatggttg tgagccacca tgtggtatca      1200
     ctggatagct caatgctgga actgtgtaga ccaggttggt cttgggcaca ttgtggcact      1260
     cacctgcctc tgcctcccaa gtgctgaggt taaagacatg cactatcata gcctttttat      1320
     tttttttaat tgtaaaacta tttttgtctt tgtgtgggta tacacacatg tgagtatgca      1380
     cgtgtaaatg caagggccct tggaggtcgt aggcttcaga tttctctgga gctggactta      1440
     gagaaattac ggcctgctct gttggtgctg atctgaacta tgtgcttttg accactggct      1500
     ttctccatcc cgcatatttt tctttggtgc tccctctttg ctttgtcttg ttttgagaca      1560
     gggttcctaa gtagtcttga ctgtcctgga acttgctacg tagaccagac aggcctgaga      1620
     cacagctgca gacttggaat taaaggagtt gtatgtatat ttgtgcaaca catccatgca      1680
     gttctcaaag aagccagaag agggcaccag atcccctgca actggagttg gaggtgtttt      1740
     tgagccacct tgtgggtctt gagaatcagg tcctctgcaa gaacagtcat tgttgctgtc      1800
     aaccagggag ccatctttcc agtcctctgc ctcctctcct cttccttctg tgtgtgtgtg      1860
     tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtttgcgtg catgcgctgt tgtggtattg      1920
     cataccttta atcccagcat ttggaggaca ggtaggtaga tctctgagtt agaggccatt      1980
     ctggtctaca tagttccaca tcagtcaagg ctacatgatg aggccctgat caataaatca      2040
     aagcc                                                                  2045
//