Dbfetch
ID AK145946; SV 1; linear; mRNA; HTC; MUS; 2435 BP. XX AC AK145946; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus 13 days pregnant adult female placenta cDNA, RIKEN full-length DE enriched library, clone:I530017E12 product:chemokine (C-C motif) DE receptor-like 2, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2435 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c2aef71c3fd5bc36082c0d857f78846e. DR Ensembl-Gn; ENSMUSG00000043953; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0035369; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0035350; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0035281; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0035345; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0035053; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0035867; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0034359; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0035020; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0035179; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0035126; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0035258; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0035166; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0035887; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0034066; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0034480; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000111888; mus_musculus. DR Ensembl-Tr; ENSMUST00000199839; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0094981; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0095079; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0095027; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0095003; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0094568; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0095514; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0095166; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0094490; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0094694; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0094550; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0094714; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0094520; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0095846; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0094596; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0093554; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=I530017E12 XX FH Key Location/Qualifiers FH FT source 1..2435 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="female" FT /dev_stage="13 days pregnant adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="I530017E12" FT /tissue_type="placenta" FT /db_xref="taxon:10090" FT CDS 493..1575 FT /codon_start=1 FT /transl_table=1 FT /note="chemokine (C-C motif) receptor-like 2 FT (MGD|MGI:1920904 GB|NM_017466, evidence: BLASTN, 99%, FT match=2084)" FT /note="putative" FT /db_xref="GOA:O35457" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR000355" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:1920904" FT /db_xref="UniProtKB/Swiss-Prot:O35457" FT /protein_id="BAE26775.1" FT /translation="MDNYTVAPDDEYDVLILDDYLDNSGPDQVPAPEFLSSQQVLQFCC FT AVFAVGLLDNVLAVFILVKYKGLKNLGNIYFLNLALSNLCFLLPLPFWAHTAAHGESPG FT NGTCKVLVGLHSSGLYSEVFSNILLLVQGYRVFSQGRLASIFTTVSCGIVACILAWAMA FT TALSLPESVFYEPRMERQKHKCAFGKPHFLPIEAPLWKYVLTSKMIILVLAFPLLVFII FT CCRQLRRRQSFRERQYDLHKPALVITGVFLLMWAPYNTVLFLSAFQEHLSLQDEKSSYH FT LDASVQVTQLVATTHCCVNPLLYLLLDRKAFMRYLRSLFPRCNDIPYQSSGGYQQAPPR FT EGHGRPIELYSNLHQRQDII" XX SQ Sequence 2435 BP; 575 A; 599 C; 590 G; 671 T; 0 other; gggtccttat ccgaggcagc ctggaggaca gctggctaag aggtacagag aagtcaaact 60 tgggataccg ggagagggag agatgaaaac aacttctcaa tttctctgcg gctgacagaa 120 gctcctgaga gaggctttca gaacttgatt ccagctggcc cgtgaaagct gtgtctggac 180 gggagagcct cagaggaata aacagtgcct tctctggctt ctccgggtca tgaccagtct 240 gttcagaagg aagtggtgtt tctctgaccc cactgttccc acagccccct ggatggtaga 300 tcatggggct gcacccttcc ccacccttgg gaactcagtc aaacggttat ctttatctcg 360 ccagcttgtc ctcgtgcttg accagcgcag tttcactttt gcaaacatct gtttatatcc 420 cttgagagaa aaaatatcaa gcaacctgcc tcaaacgacg ctgttttgtc cggtgagcaa 480 ggacagcctc cgatggataa ctacacagtg gccccggacg atgaatatga tgtcctaatc 540 ttagacgact acctggacaa cagtgggccg gaccaagttc cggcccccga gttcctctcc 600 tcccagcagg tgctacagtt ctgctgcgcg gtgtttgcgg tgggtctctt ggacaacgtg 660 ctggcggtgt ttatcttggt gaaatacaaa ggactcaaga atctggggaa catctacttc 720 ctaaacctgg cactttcaaa cctgtgtttc ctgcttcccc tgccgttctg ggcccatact 780 gcagcacacg gggaaagccc tggcaatggg acctgtaaag ttcttgtcgg actccactcc 840 tcgggcttat acagcgaggt gttttccaac atcctcctcc ttgtgcaagg atacagggtg 900 ttttcccaag ggcgactggc ctccatcttc acgacagtgt cttgtggtat tgttgcgtgc 960 atcctggcat gggccatggc tactgcgctc tctttgcccg agtctgtgtt ttatgagcct 1020 cggatggaaa gacagaaaca caagtgtgcc tttggcaaac ctcacttctt gccaatcgaa 1080 gcgccgctct ggaagtacgt tctgacgtca aaaatgatca tcttggtact tgcttttcct 1140 ctgctggttt ttataatctg ctgcaggcaa ctgaggagaa ggcagagctt cagggagaga 1200 cagtacgacc tccacaagcc ggctcttgtc ataacgggcg tgttcctttt gatgtgggcg 1260 ccttacaaca ctgtgctttt cctgtctgct ttccaggaac acttgtccct gcaggatgag 1320 aagagcagct accacctgga cgcaagtgtt caggtcacac agctggtagc gaccacccac 1380 tgctgcgtca acccgctgct ctatttgctt cttgaccgga aggcctttat gagatacctt 1440 cgcagcctgt tcccacggtg caatgatatc ccctatcaaa gtagtggagg ctatcagcaa 1500 gcgcctccaa gggaaggtca tggcaggccc attgaactgt acagcaattt gcatcaaagg 1560 caggatataa tataatataa acactcaacc ttgtctcttc acattgtttt atgccatttt 1620 tatatgtttg tataaaaata gaatataaga ggaaaggggg ctggttaatg aacatttact 1680 actaagcgtt gaatttgtct ctggcacacg gttaagttat ttataaaggt gaattccact 1740 cttcctcttt agcgtttgtc cgcagtgtgg gcgtgggcgg tgtgcattcc ataaactgaa 1800 gctcggtagt tgtccaaagt tacataacta taaagtggca aaactgatgt gtaaactcag 1860 agatcactgg ccccagagtc tgtgagttat ccaagcgtgc cagcctttca gtaactgtca 1920 gctagcagtg gtggcatgtc tgtcatccca gcactctagg aggcggaggc aggaggcatc 1980 tcacaaatgc aagtataacc tgacttcccc caacctcaat tctttttttt ttgttgttgt 2040 tgttgttcat caaaatacat gcaataaata tatatatttt taaagcacat cttgaaggtt 2100 gggattatag ttttgttggt agaacattag ccccccaagc ccagctttga tctatagcat 2160 ggcatctacc tagtatgatc atgcccattt tgttttgttt tgggaggcag ggtttctctg 2220 tgtagccctg gctgtccaag aactctcttt gtagtcgagg ctagccttga actcagagat 2280 gtgcctgcct ctgtttcctg agtgctaaca cctggtgatg cccatctcaa tatcagctca 2340 actcaagagg tggacacaga aagatgagaa gttcaaggtc attcttggct gtagagttag 2400 ttcaaggtca cctggatcca ttagaccctg tcttt 2435 //