ID AK145813; SV 1; linear; mRNA; HTC; MUS; 1280 BP.
XX
AC AK145813;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
DE library, clone:I1C0050D07 product:nucleophosmin 1, full insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-1280
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 703bcc47df5af6146bbdc12204f0291e.
DR Ensembl-Gn; ENSMUSG00000057113; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0018141; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0018114; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0018078; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0018083; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C57BL6NJ_G0018537; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0017460; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0017869; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0017979; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_LPJ_G0018051; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0017997; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0018576; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0017241; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0017509; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000075641; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0028501; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0028468; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0028428; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0028447; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C57BL6NJ_T0028947; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0027895; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0028169; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0028303; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_LPJ_T0028414; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0028269; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0028979; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0027602; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0027748; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=I1C0050D07
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FH Key Location/Qualifiers
FH
FT source 1..1280
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /dev_stage="blastocyst"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="I1C0050D07"
FT /cell_type="blastocyst"
FT /db_xref="taxon:10090"
FT CDS 99..977
FT /codon_start=1
FT /transl_table=1
FT /note="nucleophosmin 1 (MGD|MGI:106184 GB|AK028253,
FT evidence: BLASTN, 100%, match=1280)"
FT /note="putative"
FT /db_xref="GOA:Q5SQB7"
FT /db_xref="InterPro:IPR004301"
FT /db_xref="InterPro:IPR024057"
FT /db_xref="InterPro:IPR032569"
FT /db_xref="InterPro:IPR036824"
FT /db_xref="InterPro:IPR038101"
FT /db_xref="MGI:MGI:106184"
FT /db_xref="UniProtKB/TrEMBL:Q5SQB7"
FT /protein_id="BAE26667.1"
FT /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLR
FT TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKC
FT GSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDE
FT DDDEDDEDDEDDDDDDFDEEETEEKVPVKKSVRDTPAKNAQKSNQNGKDLKPSTPRSKG
FT QESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEA
FT IQDLWQWRKSL"
FT regulatory 1256..1261
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 1280
FT /note="putative"
XX
SQ Sequence 1280 BP; 420 A; 221 C; 311 G; 328 T; 0 other;
gccttggcgt gattccgtcc tgcgcgtctg ttctgtggaa caggaggcag ttgttttccg 60
tccggcttct cccacaccga agtgcgcgcc tccacctcat ggaagactcg atggatatgg 120
acatgagtcc tcttaggcct cagaactacc ttttcggctg tgaactaaag gctgacaaag 180
actatcactt taaagtggat aatgatgaaa atgagcacca gttgtcatta agaacggtca 240
gtttaggagc aggggcaaaa gatgagttac acatcgtaga ggcagaagca atgaactatg 300
aaggcagtcc aattaaagta acactggcaa ctttgaaaat gtctgtacaa ccaacagttt 360
ccctaggggg ctttgaaatt acaccacctg tggtcttacg gttgaagtgt ggttcagggc 420
ctgtgcacat tagtggacag catctagtag ctgtagagga agatgcagag tctgaagatg 480
aagatgagga ggacgtaaaa ctcttaggca tgtctggaaa gcgatctgct cctggaggtg 540
gtaacaaggt tccacagaaa aaagtaaaac ttgatgaaga tgatgaggac gatgatgagg 600
acgatgagga tgatgaggat gatgatgatg atgattttga tgaagaggaa actgaagaaa 660
aggtcccagt gaagaaatct gtacgagata ccccagccaa aaatgcacaa aaatcaaacc 720
aaaatggaaa agacttaaaa ccatcaacac cgagatcaaa gggtcaagag tccttcaaaa 780
aacaggaaaa gactcctaaa acaccaaaag gacctagttc tgtagaagac attaaggcaa 840
aaatgcaagc aagtatagaa aaaggcggtt ctcttcccaa agtggaagcc aagttcatta 900
attatgtgaa gaattgtttc cggatgactg accaggaggc tattcaagat ctctggcagt 960
ggaggaaatc tctttaagaa aagggtttaa acagtttgaa atattctgtc ttcatttctg 1020
taatagttaa tatctggctg tcctttttat aatgcaaagt gagaactttc cctactgtgt 1080
ttgataaatg ttgtccaggt tcacttgcca agaatgtgtt gtctaaaatg cctgtttagt 1140
tttcaaggat ggaactccac cctttacttg gttttaagta tgtatggaat gttatgatag 1200
gacatagtaa tagtggtcag atgtggaaat ggtagggaga caaatataca tgtgaaataa 1260
actcagtatt ttaataaagt 1280
//