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EBI Dbfetch

ID   AK143323; SV 1; linear; mRNA; HTC; MUS; 2453 BP.
XX
AC   AK143323;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE   Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length
DE   enriched library, clone:E330007H14 product:cytochrome P450, family 19,
DE   subfamily a, polypeptide 1, full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-2453
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   Ensembl-Gn; ENSMUSG00000032274; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000034811; mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=E330007H14
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FH   Key             Location/Qualifiers
FH
FT   source          1..2453
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="female"
FT                   /dev_stage="2 days pregnant adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="E330007H14"
FT                   /tissue_type="ovary"
FT                   /db_xref="taxon:10090"
FT   CDS             122..1633
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="cytochrome P450, family 19, subfamily a, polypeptide
FT                   1 (MGD|MGI:88587 GB|NM_007810, evidence: BLASTN, 99%,
FT                   match=2365)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q3ZAT3"
FT                   /db_xref="InterPro:IPR001128"
FT                   /db_xref="InterPro:IPR002401"
FT                   /db_xref="InterPro:IPR017972"
FT                   /db_xref="MGI:MGI:88587"
FT                   /db_xref="UniProtKB/TrEMBL:Q3ZAT3"
FT                   /protein_id="BAE25342.1"
FT                   /translation="MFLEMLNPMQYNVTIMVPETVTVSAMPLLLIMGLLLLIWNCESSS
FT                   SIPGPGYCLGIGPLISHGRFLWMGIGSACNYYNKMYGEFMRVWISGEETLIISKSSSMF
FT                   HVMKHSHYISRFGSKRGLQCIGMHENGIIFNNNPSLWRTIRPFFMKALTGPGLVRMVEV
FT                   CVESIKQHLDRLGEVTDTSGYVDVLTLMRHIMLDTSNMLFLGIPLDESAIVKKIQGYFN
FT                   AWQALLIKPNIFFKISWLYRKYERSVKDLKDEIAVLVEKKRHKVSTAEKLEDCMDFATD
FT                   LIFAERRGDLTKENVNQCILEMLIAAPDTMSVTLYFMLLLVAEYPEVEAAILKEIHTVV
FT                   GDRDIKIEDIQNLKVVENFINESMRYQPVVDLVMRRALEDDVIDGYPVKKGTNIILNIG
FT                   RMHRLEYFPKPNEFTLENFEKNVPYRYFQPFGFGPRGCAGKYIAMVMMKVVLVTLLRRF
FT                   QVKTLQKRCIENIPKKNDLSLHPNEDRHLVEIIFSPRNSDKYLQQ"
FT   polyA_signal    2437..2442
FT                   /note="putative"
FT   polyA_site      2453
FT                   /note="putative"
XX
SQ   Sequence 2453 BP; 664 A; 525 C; 609 G; 655 T; 0 other;
     agcacccttc caagtgacag gagccacagc caaaccgctg ggttacgttc taactccacc        60
     actgctttct tcccatagaa ctttactttt ttttttttct tctgaggcca aatagcgcaa       120
     gatgttcttg gaaatgctga accccatgca gtataatgtc accatcatgg tcccggaaac       180
     tgtgactgtc agtgccatgc cactcctgct gatcatgggc ctccttctcc tgatttggaa       240
     ttgtgagagc tcgtcttcaa taccaggtcc tggctactgt ctgggaattg ggcccctcat       300
     ttcccatggc agattcttgt ggatggggat tggaagtgcc tgcaactact acaataagat       360
     gtatggagag ttcatgagag tctggatcag tggagaggag acactcatta tcagcaagtc       420
     ctcaagcatg ttccatgtca tgaagcacag tcactacatc tcccgattcg gcagcaagcg       480
     tgggctgcag tgcatcggca tgcatgagaa cggcatcata tttaacaaca acccgagcct       540
     ttggagaaca attcgccctt tctttatgaa agctctgacg ggccctggtc ttgttcgaat       600
     ggtggaagtt tgtgtggagt ccatcaagca gcatttggac cggctgggcg aagtcaccga       660
     cacctcgggc tacgtggatg tgttgaccct catgagacac atcatgctgg acacctctaa       720
     catgctcttc ctggggatcc ccctggacga aagtgctatt gtgaagaaaa tccagggtta       780
     ctttaacgcc tggcaagctc tcctcatcaa accaaacatc ttctttaaga tttcttggct       840
     ctacagaaag tatgaacgat ccgtcaagga cttgaaagac gagatagctg ttttggtgga       900
     aaagaagaga cacaaagttt ccacagctga gaaactggaa gactgtatgg attttgcaac       960
     tgatttgatt ttcgctgaga gacgtggaga cctgacgaaa gagaacgtga atcagtgcat      1020
     actggagatg ctgattgcag cccctgacac catgtcggtc actctgtact tcatgttact      1080
     tctcgtcgca gagtatccag aggtcgaagc agcaatcctg aaggagatcc acactgttgt      1140
     gggtgacaga gacataaaga tcgaggatat ccaaaattta aaagtggtgg aaaacttcat      1200
     taatgaaagc atgcggtacc agcctgttgt ggacttggtc atgcgcagag ctctggagga      1260
     tgacgtaatt gacggctacc cggttaaaaa gggaactaac atcattctga acatcggaag      1320
     aatgcacagg ctcgagtact tccctaagcc caatgaattt acccttgaaa actttgagaa      1380
     gaatgttccc tacaggtact ttcagccttt tggctttggg ccccgcggct gtgctgggaa      1440
     gtacatcgcc atggtgatga tgaaagttgt cttggttaca cttttgagac gattccaggt      1500
     gaagacactg caaaaaaggt gtattgaaaa cataccgaaa aagaatgacc tgtccttgca      1560
     cccaaatgag gacaggcacc ttgtggaaat aattttctct ccaaggaatt cagacaagta      1620
     cctccaacag tgaagaagtg tggcctatct actctggggc attacttatc cgtaattaca      1680
     tggaaaccat ccattttatc gagtaggtgg cgtgaacctc accatgaaca tttgatggtc      1740
     tgtagaattt tatgatcata gctcctatgg tttgtcatca agctgggcat ccatccaggg      1800
     agccaggatg caaaagaaag gagtctgtgt tggggaccag tgaagaaact gaagccttaa      1860
     aggaccaatc ctacaatata taccttggga aagacagacc atcagtaaaa cacgtctggt      1920
     ctcctgctag agttctacag ctgttgtcag cacatcgaaa tgactctggc agaagtactt      1980
     aagttattag aaaggccagg tcaacatccc agcatgtggg ccaggcataa atgaacaaca      2040
     ggactttcat atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc gtgcgcgccc      2100
     acaagcatgt gccatgtacg tatgcaagtc tgtgtgtgta cttgtgcatg catgaataca      2160
     tagtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgg tagactcttt ctacattaaa      2220
     cccagttgct tacggtggat ccacatgtaa actgtttggg ggcaaaagtg aaatataggg      2280
     tgtcgtttct tactctcaat ttgtgctccc aggagtgtag ttagactgta gtaggtatag      2340
     attcaggtaa aacatgccta agtagtatta gcctgagtaa aatatagcta ggactctatg      2400
     tgtggtgtag ggggaaaaat cacatggtgc atttcaaata aagaagtctt tct             2453
//


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