Dbfetch

ID   AK141636; SV 1; linear; mRNA; HTC; MUS; 4695 BP.
XX
AC   AK141636;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE   Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
DE   library, clone:C630048L11 product:5-hydroxytryptamine (serotonin) receptor
DE   5A, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4695
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 701f7525bc18d68b51c9f59019e9a9ea.
DR   Ensembl-Gn; ENSMUSG00000039106; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0029367; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0029333; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0029284; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0029344; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0029065; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0029797; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0028476; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0029033; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0029182; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0029140; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0029267; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0029169; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0029831; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0028200; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0028556; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000036227; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0070567; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0070645; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0070557; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0070568; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0070215; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0071046; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0070749; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0070155; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0070292; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0070205; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0070368; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0070230; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0071249; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0070221; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0069373; mus_musculus_wsbeij.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=C630048L11
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FH   Key             Location/Qualifiers
FH
FT   source          1..4695
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="C630048L11"
FT                   /tissue_type="hippocampus"
FT                   /db_xref="taxon:10090"
FT   CDS             302..1375
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="5-hydroxytryptamine (serotonin) receptor 5A
FT                   (MGD|MGI:96283 GB|NM_008314, evidence: BLASTN, 99%,
FT                   match=1477)"
FT                   /note="putative"
FT                   /db_xref="GOA:P30966"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR001397"
FT                   /db_xref="InterPro:IPR002231"
FT                   /db_xref="InterPro:IPR017452"
FT                   /db_xref="MGI:MGI:96283"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30966"
FT                   /protein_id="BAE24778.1"
FT                   /translation="MDLPVNLTSFSLSTPSSLEPNRSLDTEVLRPSRPFLSAFRVLVLT
FT                   LLGFLAAATFTWNLLVLATILKVRTFHRVPHNLVASMAISDVLVAVLVMPLSLVHELSG
FT                   RRWQLGRRLCQLWIACDVLCCTASIWNVTAIALDRYWSITRHLEYTLRTRKRVSNVMIL
FT                   LTWALSTVISLAPLLFGWGETYSEPSEECQVSREPSYTVFSTVGAFYLPLCVVLFVYWK
FT                   IYRAAKFRMGSRKTNSVSPVPEAVEVKNATQHPQMVFTVRHATVTFQTEGDTWREQKEQ
FT                   RAALMVGILIGVFVLCWFPFFVTELISPLCSWDVPAIWKSIFLWLGYSNSFFNPLIYTA
FT                   FNRSYSSAFKVFFSKQQ"
FT   regulatory      4673..4678
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      4695
FT                   /note="putative"
XX
SQ   Sequence 4695 BP; 1183 A; 1197 C; 1010 G; 1305 T; 0 other;
     gaacagtctc cgcctaggtg aggaacagca ggcatgtgat agcaaaggca ggccctggct        60
     tctagattca gccccttgag tccgctttcc atatctctaa ggatacctgg gctgcgctgc       120
     ttgtagccca gcaccctcct ctctgctaca atttcctccg gactctgact gggtggagac       180
     tgaggccagg ttcttggctc ttagcaaaat cctctccatt ggccatcggt cgcaaacatc       240
     tagattgact tcagtgggct cggtggcaac acagtctaaa cacaggtgtc ctgggacagc       300
     aatggatctg cctgtaaact tgacctcctt ttctctctct actccctcct ctttggaacc       360
     taaccgcagc ttggacacgg aagtcctgcg ccctagtcgg ccttttctct cagctttccg       420
     agtgctagtc ctgactttgt tgggctttct agctgcggcc acattcactt ggaacctgct       480
     ggtgctggct accatcctca aggtacgcac cttccaccga gtaccacaca acctggtagc       540
     ttccatggcc atctcggatg tgctagtggc tgtgctggtt atgccactga gcctggtaca       600
     tgagctgtct gggcgccgct ggcagctggg ccggcgtcta tgccagctgt ggatcgcatg       660
     tgacgtgctc tgctgtactg ccagcatctg gaatgtgaca gcaatagctc tggaccgcta       720
     ctggtcaatc acgcgccacc tggagtacac actccgtacc cgcaagcgtg tctccaatgt       780
     gatgatcctg ctcacctggg cactctccac tgtcatctct ctggctccac tgctatttgg       840
     ctggggagag acttattctg agcccagtga ggaatgccaa gtcagtcgcg agccttccta       900
     caccgtgttc tccaccgtgg gtgccttcta cctgccgctg tgcgtggtgc tctttgtgta       960
     ctggaaaatt tacagggcgg cgaaattccg catgggctcc aggaagacca acagcgtctc      1020
     ccccgtaccc gaagctgtgg aggtgaagaa tgctacacaa catccccaga tggtgttcac      1080
     ggtccgccat gccaccgtca ccttccagac agaaggggat acgtggaggg agcagaagga      1140
     gcaaagggca gccctcatgg tgggcatcct catcggagtg tttgtgctct gctggttccc      1200
     tttcttcgtc acagagctca tcagtcccct gtgttcctgg gacgtccctg ccatctggaa      1260
     gagcatcttc ctgtggttgg gctattctaa ttccttcttc aacccactca tctacacagc      1320
     attcaacagg agctacagca gtgctttcaa ggtcttcttc tccaagcaac aatgagagac      1380
     cacatgggag tgccttcttc ccatagcttg tagctcagtg ggttatattg tcccatgaac      1440
     ctttgcaggc tgcccagctg tcttgaggac aagatccatc tgccaagggc accagggtca      1500
     catcagagct cagctcactt cagttctatg accatgtgtt ggaagttgta ttcacctgaa      1560
     ggctctggtg gtttatgtct gggcactctt cctcactctg taccagcagc cacggacctg      1620
     gcccacaaag tgcccattcc tccttcaact ccactccagc agagacatga gaagtttgat      1680
     tagaacatca ggagggagga agtgagacaa ctggggcagg cagagaaaga cagaaagaac      1740
     aaggctagtg gggatcacac acacctgtaa ccctagcacc aaggagacta aggcaggagg      1800
     agctcaaatt tggagccaac ctgggctaac atggtaagtt caaaaccagc ccgaactatc      1860
     taacaacata tatagcaaca gcaaatgcaa tggagagact gtttgaaaag cagcagccca      1920
     taagggcaaa atttccagaa cagccctcat ttcagagttc tgctctgtgg tcctggagtg      1980
     tatgtcccaa tatggggtcc ttcctaatat ttgatcacaa attctgtccc caaacatatc      2040
     aaagcaccag cccatttgtg atgcacagtg attcctgtct ttaccatttg ttcattgtaa      2100
     acacaaagtc cccctctgtc tgtctctctg tctgtccctc tctctgtctt tatccctgtt      2160
     tctgtttctc tgtttcctct ctctccctcc ctccctccct ctctctctct ctctctctaa      2220
     ggacagtttc cagttaaaat caactcagtc catcaactgg aaaagcaaaa tatttccttc      2280
     cattttgaaa caattgctca tgaaaaatag aaaaatctac caatttcaca gaatttatca      2340
     aaattattta tttactattg ggttttcttg gtctaatttc tttaaatttt tctagcctta      2400
     gtgtttcttt cttaaatatt aaaattttag gctaacagca gccatgagct atctattttt      2460
     taaatagagt ttcatagttg gtgactatat aaggacctga caaccagaca catgaagtga      2520
     acaggagtgc tggccatttt atagtgatgg ttttgttggt gtatgaactt gaccagatag      2580
     gcagacacgg gtcaagtgat gccactatca agttggcagt gtgactggtg agtcaagaca      2640
     ggctagggaa gacacagtgt ttatacggcc acagaaaacc ttgggcacac tcttacctcc      2700
     aaggctatcc caagggaact ctgagaacac tatcaaaaga gccaaggagg gaaagaagag      2760
     ccagagccag tcaccttttg agaaccctgt ctgtgctgac ttctcccata aactgaagat      2820
     agagctatca ggacctacag ggttgtggac aactcttagc atgtggttct cagcaaaagc      2880
     acccacactt cagatcccag cagcgagaaa cactggtttg cttttacagc cacccagggg      2940
     ccgttggctg aagaatcctc atccaggaag tgggctctca gcacacccag acgatgctgc      3000
     cattgcagag agttggcatg tgtctgcagt tggctggaag tgtgatgtga caacttcatc      3060
     cttatgaggt tgtaactatc tgttcattta tttatgtttg acccagggct gtactaagta      3120
     gccttggctg tcctggaacc cactgtatag accaggctga tctcaaactc acagagacct      3180
     tcctgcctct acctctgcct ctgtttcctg aatgctggaa aagtatgtat taccacaccc      3240
     agaccaagag ggtttttaga caaaaaaatt ctccagttct ctgagctcct ttgtcttgga      3300
     gcagtggtct agactagaca cacaccgtgc actggggact ggcctgagcc aggctggaaa      3360
     gtgaacagaa cgaaggactc atgcgtccag actgtcatga ctgttctcat aacaaggttt      3420
     cattaatggt ttcaacaaga gctttttctc tttctttttt tggccttggt ttttttgttg      3480
     actctgagtc ctaggaaagt gatgcacata gaatgttcta actgcaaact ctgcactgtc      3540
     tgtctgtctg tcctttactg cctatgctca gcctggagga ctcactatga tgagcctcta      3600
     gacccaagga aagtcggggt gctcctctgt agcagcagta gagtgactgc ccaccctggt      3660
     atgctgagta cttacagcag cacttagtcc atccttgcca cctgaagggt cccaaccgac      3720
     cgacaccact tttatcacca catgggacca ttcgcccata tcacctcaat ttaaaacaaa      3780
     cagcttaccc atcattcaaa atatctccaa actctagggc aataaaactc cattatattc      3840
     catgtccttg atttcacaaa tgcacaaatc aaaactatat atatatatat atatacatat      3900
     atatatatat gaaggcacag atatattata ttgtatataa taaattgtat ccatccacat      3960
     tccaaaatag aaaatttgtg atcatttctt tgtggttttg acatgaggtt atcttgaatt      4020
     tcctgcaaag acaatcttta caccagaata tgaactgatg aaaggagttc gacagccagc      4080
     ttcatgactg tggacatgtt tcatgttgat tcctatctgt gcatgaaagc aatgcagtgg      4140
     agaacttact tgggatttcc ttagattttt attttgcttc catgtatttc ttagttcaca      4200
     tactagactc ataagtactt taaagtatag actcgcttac ttcctcatat ttcctgtccc      4260
     caggatcact gggacccagg gggatcactt gacttttcag tgttataatg aggatgtgtt      4320
     tgttgagtgc ccacaagaga aggaatggac accgcatacg gactccagtg taaactgtac      4380
     catgtctgtc tatctaaaat ttctgatggg gtttctcatc cagtcccatc cttcaatatt      4440
     tacctgtttt tccttaaagg tttgtttgaa gctaaaatga cagctcagtg actatgagca      4500
     catcctgctc ttgcaggtga cctggattct atctttcctc agcaccacat taggcaacgc      4560
     ataaccacat gtaacaccgt ctctagggga tctgatatct ctggcctgag cagctgccta      4620
     caggcatgca cacatgtgca aacctacaca catgtacata taattttaaa ataataaata      4680
     cagtgatttt ttttg                                                       4695
//