Dbfetch

ID   AK139290; SV 1; linear; mRNA; HTC; MUS; 1526 BP.
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AC   AK139290;
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DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE   Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched
DE   library, clone:A730094N22 product:steroid 5 alpha-reductase 2-like, full
DE   insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
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RN   [1]
RP   1-1526
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
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RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
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RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
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RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; 3d558f44e83081d9d85806cc7e965461.
DR   Ensembl-Gn; ENSMUSG00000029233; mus_musculus.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0029443; mus_musculus_nodshiltj.
DR   Ensembl-Tr; ENSMUST00000031143; mus_musculus.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0071874; mus_musculus_nodshiltj.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=A730094N22
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FH   Key             Location/Qualifiers
FH
FT   source          1..1526
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="7 days neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="A730094N22"
FT                   /tissue_type="cerebellum"
FT                   /db_xref="taxon:10090"
FT   CDS             53..1045
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="putative"
FT                   /note="steroid 5 alpha-reductase 2-like (MGD|MGI:1930252
FT                   GB|NM_020611, evidence: BLASTN, 99%, match=1525)"
FT                   /db_xref="GOA:Q9WUP4"
FT                   /db_xref="InterPro:IPR001104"
FT                   /db_xref="MGI:MGI:1930252"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9WUP4"
FT                   /protein_id="BAE23944.1"
FT                   /translation="MAGWAGFELSALNPLRTLWLALAAAFLFALLLQLAPARLLPSCAL
FT                   FQDLLRYGKTKQSGSRRPAVCRAFDVPKRYFSHFYVISVVWNGSLLWLLSQSLFLGAPF
FT                   PNWLSALLRTLGATQFQALEMESKASRMPAAELALSAFLVLVFLWVHSLRRLFECFYVS
FT                   VFSNAAIHVVQYCFGLVYYVLVGLTVLSQVPMDDKNVYVLGKNLLIQARWFHILGMVMF
FT                   FWSSAHQYKCHVILSNLRRNKKGVVIHCQHRIPFGDWFEYVSSANYLAELMIYISMAVT
FT                   FGLHNLTWWLVVTYVFSSQALSAFFNHKFYRSTFVSYPKHRKAFLPFLF"
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SQ   Sequence 1526 BP; 306 A; 425 C; 387 G; 408 T; 0 other;
     ggagagaagg agggcggcgc ggcggcgcgc atctgtagcc ggctcccggg ctatggctgg        60
     gtgggccggg tttgagctct cggccctgaa ccccctgcgg acgctgtggc tggcgctggc       120
     cgccgccttc ctgttcgcgc tgctgctgca gctggcgccc gccaggctgc tgccgagctg       180
     cgcgctcttc caggacctgc tccgctacgg gaagaccaag cagtccggct cgcggcgccc       240
     cgccgtctgc agggccttcg atgtccccaa gaggtacttt tctcacttct acgtcatctc       300
     agttgtgtgg aatggctccc tgctctggct actttctcag tcgttgttcc tgggagcacc       360
     ttttccaaac tggcttagtg ctctgctcag aactcttggg gccacacagt tccaagccct       420
     ggagatggag tccaaggctt ctcggatgcc agcggctgag ctggctctgt ctgccttctt       480
     ggtcttggtg ttcctctggg tccacagcct tcggagactc tttgagtgct tctacgtcag       540
     tgtcttctct aatgcagcca ttcacgttgt gcagtactgt ttcgggcttg tctactatgt       600
     gcttgttggc ctgactgtac tgagccaagt gcccatggat gataagaatg tgtatgttct       660
     ggggaagaat ctactgatac aagcccggtg gttccacatc ctgggcatgg tgatgttctt       720
     ctggtcatcc gcccatcagt ataaatgcca cgtcatcctc agcaacctca ggagaaacaa       780
     aaaaggtgtg gtcatccact gccagcaccg gatccccttt ggagactggt tcgagtacgt       840
     gtcttcagct aactacctag cagagctgat gatctacatc tccatggctg tcacctttgg       900
     gctccacaac ttaacctggt ggctggtggt gacgtatgtc ttctccagcc aagccttgtc       960
     cgcattcttc aaccacaagt tctacagaag cacatttgtc tcctacccaa agcataggaa      1020
     agcgttcctc ccatttttgt tttaaagcgg gctttatggt gaagaaagcc aggtgacaga      1080
     ttccattcct agaggcactg agacagagac caaagtacac tttctgcggg aatgtttgac      1140
     ggtccttgtt ctacttcaga gccagccgag cagtgttcac cgagcgaggc gttattcctg      1200
     gagaacacat tccagcagac ctaggcttgc aggatcggct ttctgccaag ctttacagag      1260
     ctaactgata acaagtaaac gggtgtctcc aaactgcttt ctggccgcac taaccagtat      1320
     aaacagctgt gcatggatac atgcatgctt gagtcagtct ctctctctct ctctctctct      1380
     ctatctctct ctctctctct ctctctctct ctctctagct gtgggaacag ttaactgcac      1440
     tgagtgctgt gggagatcat aggtttttaa taaatgtcac atgccaataa aaacaggaaa      1500
     ctctgaaaat aatatgaatg tacagt                                           1526
//