ID AK138964; SV 1; linear; mRNA; HTC; MUS; 2679 BP.
XX
AC AK138964;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched
DE library, clone:A530031H21 product:frizzled homolog 6 (Drosophila), full
DE insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2679
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR MD5; 34d98a03b1c17965ae8990cf72faaf46.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=A530031H21
XX
FH Key Location/Qualifiers
FH
FT source 1..2679
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="male"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="A530031H21"
FT /tissue_type="aorta and vein"
FT /db_xref="taxon:10090"
FT CDS <1..1162
FT /codon_start=2
FT /transl_table=1
FT /note="frizzled homolog 6 (Drosophila) (MGD|MGI:108474
FT GB|AK088399, evidence: BLASTN, 100%, match=2678)"
FT /note="putative"
FT /note="start codon is not identified"
FT /db_xref="GOA:Q3UTZ0"
FT /db_xref="InterPro:IPR000539"
FT /db_xref="InterPro:IPR015526"
FT /db_xref="InterPro:IPR017981"
FT /db_xref="InterPro:IPR026543"
FT /db_xref="MGI:MGI:108474"
FT /db_xref="UniProtKB/TrEMBL:Q3UTZ0"
FT /protein_id="BAE23839.1"
FT /translation="AVWFHAVAWGAPGFLTVMLLAMNKVEGDNISGVCFVGLYDLDASR
FT YFVLLPLCLCVFVGLSLLLAGIISLNHVRQVIQHDGRNQEKLKKFMIRIGVFSGLYLVP
FT LVTLLGCYVYELVNRITWEMTWFSDHCHQYRIPCPYQANPKARPELALFMIKYLMTLIV
FT GISAVFWVGSKKTCTEWAGFFKRNRKRDPISESRRVLQESCEFFLKHNSKVKHKKKHGA
FT PGPHRLKVISKSMGTSTGATTNHGTSAMAIADHDYLGQETSTEVHTSPEASVKEGRADR
FT ANTPSAKDRDCGESAGPSSKLSGNRNGRESRAGGLKERSNGSEGAPSEGRVSPKSSVPE
FT TGLIDCSTSQAASSPEPTSLKGSTSLPVHSASRARKEQGAGSHSDA"
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SQ Sequence 2679 BP; 682 A; 608 C; 628 G; 761 T; 0 other;
tgcagtgtgg ttccatgccg ttgcctgggg ggcgcccggg ttcctgaccg tcatgctgct 60
cgctatgaat aaggttgaag gagacaacat tagcggcgtt tgcttcgttg gcctgtatga 120
cctggacgcc tctcgctact tcgtccttct gcctctgtgc ctctgcgtat ttgttgggct 180
gtctctcctc ttagccggca tcatctcctt gaatcatgtc cgacaagtca tacagcatga 240
tggccggaac caagagaagc taaagaaatt catgattcgc atcggagtct tcagtggcct 300
gtatcttgtg cccttagtga cacttctcgg ttgctatgtc tatgagctag tgaacaggat 360
cacctgggag atgacatggt tctctgatca ttgtcaccag taccgcatcc cgtgccctta 420
ccaggcaaat ccaaaagctc gaccagaatt ggctttattt atgataaaat atctgatgac 480
attaattgtt ggtatctctg cggtcttctg ggttggaagc aaaaagacgt gcacagaatg 540
ggccgggttc tttaagcgaa accgcaagcg agaccccatc agtgagagcc gccgagtgct 600
gcaagagtcc tgtgagttct tcctgaagca caactctaaa gtgaagcaca agaagaagca 660
tggcgcacca gggcctcata ggctgaaggt catttccaag tccatgggaa ctagcacagg 720
agcgaccaca aatcatggca cctctgccat ggcaatcgct gaccatgatt acttagggca 780
agaaacttca acagaagtcc acacctcccc agaagcatcc gtcaaagagg gacgagcaga 840
ccgagcaaac actcccagcg ccaaagatcg ggactgtggg gaatctgcag ggcccagttc 900
caagctctct gggaaccgga acggcaggga aagccgagcg ggcggcctga aggagagaag 960
caatggatca gagggggctc caagtgaagg aagggtaagt ccaaagagca gcgttcctga 1020
gactggcctg atagactgca gcacttcaca ggccgccagt tctccagaac caaccagcct 1080
caagggctcc acatctctgc ctgttcactc agcttccaga gctaggaaag agcagggtgc 1140
tggcagccat tccgacgctt gaagaaaact gtctcgttcc cccagaagca catgtatgtt 1200
acactggaga tgaccaactg atttgtctta taaaggccac tgttgagctg ggagagtagc 1260
ccagtggtac agcgcccacc tggaatactt gaggacctgg ggttgtctcc cagcactgca 1320
aaaggaaaat tcactgttac agtcttcctt gcacttaaac cagctttgtc tattgttttt 1380
ttggtttggc ttttattttt gttgctgtta tttttgttgt tgtttgtttg tttttttgtt 1440
tgtttgtttg agacagggtt tctttgctag ccctgactgt cctgaaactc cctctgtaga 1500
ccaggctggc ctcaaactta cagagatctg cctgcctcag cctcccgagt gctgggaata 1560
atggtgtggt caccactgcc cagccttttg tctgttttta aacttgaaag aaacaacagc 1620
ccagatttca aaaataatat aatgcattta tacctaaaaa accaaccagg agtgcccagt 1680
taataacact ttttaaatgt ggggatggga agggcattag aggagtcttc cttctattga 1740
agattcatta aagtatttta agatatgctc tttcactctt tatataaatc caagattttt 1800
ctttgctgaa gtatttaaaa cttttgtacc tttatatgta gatatgaatt tgaaaatatg 1860
cttatgtgta tttgaacttt tgaaaatcct agagaattga atcaaatatt tttatgatgt 1920
ttttctacta ttttagctac tttgcgactg tgatagctgt tacactggat ttttaaaaaa 1980
cttgtacagc agcctcttta cagtaaaaag agtgggtgtc acactgaaag gtctgtaaga 2040
agtggtcaca gccaccccta ccttccccaa aaggaggaac ttggtggcag gtccctccct 2100
gattggactg tccctttctt tctgcatgtt ataaatcagc aggtaagatg gtaggttttt 2160
acaagttagg ccgagctgtc gattcccctt ttaagtgttg aattaggatt gaattatggc 2220
catttgtagt tgctcgtgcc tgtctttatt ttagtatttt atttcccgag acaggaactc 2280
actgtgtggt gctccttggc tgtctggtgt tcagtctgtc ccaggcaggt cacagagatc 2340
tccccctctg cagcccactc atctctccca agccaccaca ctcagctttt atctgtttta 2400
aaaatttaaa cttaaaaaaa tgtttttgga atagtacaaa cacattgtgt tgtaaatttc 2460
tttgatgcta tgcaaaattc ctatctgcat ctaagcctgc aaaagaaaat gtgcgaaggg 2520
cagagtcaga gttgggcagg aagagtgtag tgcagcagat gcagcgtgaa gacactgaag 2580
gtgctaagac agcgtctcag tgctggtcct ccttaaggat tatctcgcca gcgaggtttt 2640
cttagatact ttgatcccat tggagctctg ttaaagttt 2679
//