Dbfetch
ID AK137387; SV 1; linear; mRNA; HTC; MUS; 3512 BP. XX AC AK137387; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched DE library, clone:9630042L14 product:solute carrier family 12, member 6, full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3512 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c26f54532a63add8da5030337eb91a26. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=9630042L14 XX FH Key Location/Qualifiers FH FT source 1..3512 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="16 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="9630042L14" FT /tissue_type="cerebellum" FT /db_xref="taxon:10090" FT CDS 380..2713 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="solute carrier family 12, member 6 (MGD|MGI:2135960 FT GB|NM_133648, evidence: BLASTN, 99%, match=2489)" FT /db_xref="GOA:Q3UVD1" FT /db_xref="InterPro:IPR000076" FT /db_xref="InterPro:IPR004841" FT /db_xref="InterPro:IPR004842" FT /db_xref="InterPro:IPR018491" FT /db_xref="InterPro:IPR030364" FT /db_xref="UniProtKB/TrEMBL:Q3UVD1" FT /protein_id="BAE23339.1" FT /translation="MGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGILQAFAIVLICCC FT CTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAI FT EIFLVYIVPRAAIFRSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLF FT LACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHLDICSKTKEVDNMTVPSKLW FT GFFCNSSQFFNATCDEYFVHNNVISIQGIPGLASGIITENLWSNYLPKGEIIEKPSAKS FT SDVLGNLNHEYVLADITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAI FT LTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGA FT GLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLV FT APILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWY FT YAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLL FT VLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGDALAAEQTIKHLME FT AEKVKGFCQLVVAAKLKEGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIG FT TVRVTTAAHLALLVAKNVSFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVFW FT VTTLPLAVMVGLNLKRQGLFLAVP" XX SQ Sequence 3512 BP; 863 A; 852 C; 817 G; 980 T; 0 other; aagatttagc tcccgagaaa gtgtgccaga aacaagccgt agtgagccta tgagcgaact 60 gtctggggct actacttctc tggcaactgt tgccctagat ccttccagtg accggacttc 120 taatccccag gatgttacgg aggatgacgg ccataaaaaa gcccgaaatg cttatctcaa 180 taattccaac tatgaagaag gagacgaata ttttgataaa aatttggcac tctttgagga 240 agaaatggac accagaccaa aggtgtcttc tctcctcaac cgcatggcca actaaacaaa 300 tctgacacaa ggagcaaagg aacatgaaga ggcagagaac atcactgaag ggaaaaagaa 360 gcctaccaag agcccccaaa tgggtacttt catgggtgtc tacctcccat gtctacagaa 420 catctttgga gtgatcctct tcctgcgtct tacctgggta gtgggaacag ctggaatcct 480 tcaggccttt gcaattgtcc tcatctgctg ctgctgtaca atgttaactg ccatctccat 540 gagcgccatc gccactaacg gagtggtgcc agctgggggc tcatacttca tgatttccag 600 agccctgggc ccagagtttg gcggggctgt aggcctctgc ttttatcttg gcaccacatt 660 tgcagcagcc atgtatattc ttggtgccat tgaaatcttt ctggtataca ttgtcccccg 720 agctgccatc tttcggagtg acgatgcact caaggagtca gcagctatgc tgaacaacat 780 gcgcgtctat ggtacagcct tcttggtcct catggtcttg gtggtattca tcggcgtacg 840 ctatgtgaat aagtttgcct cactcttcct ggcctgtgta attgtgtcga tcttggctat 900 ctatgctggt gccatcaagt cttcctttgc tccaccacac ttcccggtct gtatgctggg 960 caaccgtacc ctgtcatcaa gacaccttga catttgctct aagaccaagg aggttgacaa 1020 catgacagta ccatcaaagt tatggggatt cttctgcaac tcgagtcagt tctttaatgc 1080 cacctgtgat gagtactttg ttcacaataa cgtcatctca atccaaggca ttccagggtt 1140 ggctagtggt atcattactg aaaatctttg gagtaattat ttaccaaagg gtgagataat 1200 tgaaaagcca tcagccaagt catctgatgt cttaggcaac ttaaaccatg aatatgttct 1260 tgctgatatc accacctcct tcactctgct ggtggggatc ttctttccct cggtcacagg 1320 tatcatggct gggtcaaaca gatctggaga tctgaaagat gcccagaagt ctattcccat 1380 tgggaccatc cttgccatcc tgaccacatc ctttgtgtat ttaagcaatg ttgtcctttt 1440 tggtgcatgt attgaaggag tcgttctcag agacaaattt ggggatgctg taaaagggaa 1500 tttggttgta ggcaccttat cctggccatc cccgtgggtg atcgttattg gctccttctt 1560 ttcaacatgt ggggctgggc tgcagagcct cacaggtgcg cctcggctgc tgcaggctat 1620 cgccaaggat aacatcatac ctttccttag ggtttttggt cacagcaaag ctaatgggga 1680 acctacctgg gctttacttc taactgctgc catagcagag ctgggaattc tcatcgcctc 1740 cctggatctc gtggccccaa ttctttccat gttttttctc atgtgttacc tctttgtgaa 1800 cttggcttgt gccttgcaaa cattgctgcg aacccccaac tggaggcctc gattccgcta 1860 ttatcactgg gccctctctt tcatgggaat gagtatctgt ctagctctga tgttcatttc 1920 ttcttggtat tatgccattg tagctatggt aatagctggc atgatctaca agtacattga 1980 atatcaaggg gctgagaaag aatgggggga tggtatccgt gggctgtcgc tcagtgcagc 2040 ccgcttcgct ttgctccgtc tagaggaagg acctcctcac actaaaaact ggaggcctca 2100 gctgctcgtc ctactgaagc tggatgaaga tttacacgtc aagcaccctc gcctcctcac 2160 ctttgcctcc cagctcaagg caggaaaggg actcacgatt gtgggctctg tcatcgtggg 2220 gaacttcttg gagaactatg gtgacgcgct cgcggcagag cagaccatta agcacctaat 2280 ggaggcagaa aaggtaaaag gattctgcca attggtggtg gctgccaagc tgaaagaggg 2340 catttcacac ctcatccagt cctgtggcct cggaggcatg aaacacaaca cagtggtgat 2400 gggctggccc aatggctggc gtcagagtga agatgctcgc gcttggaaga ctttcattgg 2460 cacagtacga gtgacaactg ctgcccatct agccctgctg gtggctaaaa atgtctcctt 2520 ctttcccagc aatgtggagc agttttctga gggcaacatt gatgtgtggt ggattgtgca 2580 tgatgggggc atgctcatgc tattaccgtt cctgctgaaa cagcacaagg tattctgggt 2640 caccacttta cctcttgctg taatggtggg acttaatctg aagagacagg gcttgttctt 2700 ggctgtccca taatcccagc tccagcctta tgagaagtag agtgggttta aggttttatt 2760 ttttaatttt acttgttgtt atattttata ccagtcctcc ttaagtgaat tcctgcaagc 2820 ttactaaaat tcctgtataa tagtgtttag aaaaaacaaa aaacagagaa accaaataca 2880 agggtacatc agtttcaggt gcagtcctca ctgctctgga actcgctctg tacaccaggc 2940 tgcccttgaa ctcagagatc caccagcctt tacctcctga gttctaggat tggagatatg 3000 tgccaccata cccagctctc tattaaattt gtaatggtat cattgctatg ctgtttgaat 3060 aaaccactca gtgtaccctg agtgcggata tgtttttccc tccccatatg aagccagcag 3120 ctgttctgca gtgggcagca gtttggtgtc ctctaaatca atactgacat aattatctgt 3180 aggtagcact ccatccattt taaactgata gtcttacact gtcttcctgc aagccctgat 3240 tattctaccc ctgctctgac ttaggagacc aatttcacaa taccatatga gcaaattttt 3300 tcttggtaat gaaattaaga acttaaaacc aggaataatc gggcagtagt ggtgcacgcc 3360 tttaatccca gcactcggga gacatcggat ttctgagttc ggggccagcc tgctctacag 3420 agtgagattt ctgagttcga ggccagcctg ctctacagag tgagttccag gacagccagg 3480 acaacaaaga gaaaccctgt ctcaaaaaaa cc 3512 //