Dbfetch

ID   AK137323; SV 1; linear; mRNA; HTC; MUS; 4453 BP.
XX
AC   AK137323;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
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DE   Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched
DE   library, clone:9630009M09 product:5-hydroxytryptamine (serotonin) receptor
DE   5A, full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4453
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; 680b304b5000c883865c13c6a4cdbf50.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=9630009M09
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FH   Key             Location/Qualifiers
FH
FT   source          1..4453
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="16 days neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="9630009M09"
FT                   /tissue_type="cerebellum"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..451
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /note="5-hydroxytryptamine (serotonin) receptor 5A
FT                   (MGD|MGI:96283 GB|NM_008314, evidence: BLASTN, 99%,
FT                   match=553)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="GOA:Q3UVG4"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR001397"
FT                   /db_xref="InterPro:IPR017452"
FT                   /db_xref="MGI:MGI:96283"
FT                   /db_xref="UniProtKB/TrEMBL:Q3UVG4"
FT                   /protein_id="BAE23305.1"
FT                   /translation="FYLPLCVVLFVYWKIYRAAKFRMGSRKTNSVSPVPEAVEVKNATQ
FT                   HPQMVFTVRHATVTFQTEGDTWREQKEQRAALMVGILIGVFVLCWFPFFVTELISPLCS
FT                   WDVPAIWKSIFLWLGYSNSFFNPLIYTAFNRSYSSAFKVFFSKQQ"
XX
SQ   Sequence 4453 BP; 1229 A; 1044 C; 888 G; 1292 T; 0 other;
     gttctacctg ccgctgtgcg tggtgctctt tgtgtactgg aaaatttaca gggcggcgaa        60
     attccgcatg ggctccagga agaccaacag cgtctccccc gtacccgaag ctgtggaggt       120
     gaagaatgct acacaacatc cccagatggt gttcacggtc cgccatgcca ccgtcacctt       180
     ccagacagaa ggggatacgt ggagggagca gaaggagcaa agggcagccc tcatggtggg       240
     catcctcatc ggagtgtttg tgctctgctg gttccctttc ttcgtcacag agctcatcag       300
     tcccctgtgt tcctgggacg tccctgccat ctggaagagc atcttcctgt ggttgggcta       360
     ttctaattcc ttcttcaacc cactcatcta cacagcattc aacaggagct acagcagtgc       420
     tttcaaggtc ttcttctcca agcaacaatg agagaccaca tgggagtgcc ttcttcccat       480
     agcttgtagc tcagtgggtt atattgtccc atgaaccttt gcaggctgcc cagctgtctt       540
     gaggacaaga tccatctgcc aagggcacca gggtcacatc agagctcagc tcacttcagt       600
     tctatgacca tgtgttggaa gttgtattca cctgaaggct ctggtggttt atgtctgggc       660
     actcttcctc actctgtacc agcagccacg gacctggccc acaaagtgcc cattcctcct       720
     tcaactccac tccagcagag acatgagaag tttgattaga acatcaggag ggaggaagtg       780
     agacaactgg ggcaggcaga gaaagacaga aagaacaagg ctagtgggga tcacacacac       840
     ctgtaaccct agcaccaagg agactaaggc aggaggagct caaatttgga gccaacctgg       900
     gctaacatgg taagttcaaa accagcccga actatctaac aacatatata gcaacagcaa       960
     atgcaatgga gagactgttt gaaaagcagc agcccataag ggcaaaattt ccagaacagc      1020
     cctcatttca gagttctgct ctgtggtcct ggagtgtatg tcccaatatg gggtccttcc      1080
     taatatttga tcacaaattc tgtccccaaa catatcaaag caccagccca tttgtgatgc      1140
     acagtgattc ctgtctttac catttgttca ttgtaaacac aaagtccccc tctgtctgtc      1200
     tctctgtctg tccctctctc tgtctttatc cctgtttctg tttctctgtt tcctctctct      1260
     ccctccctcc ctccctctct ctctctctct ctctaaggac agtttccagt taaaatcaac      1320
     tcagtccatc aactggaaaa gcaaaatatt tccttccatt ttgaaacaat tgctcatgaa      1380
     aaatagaaaa atctaccaat ttcacagaat ttatcaaaat tatttattta ctattgggtt      1440
     ttcttggtct aatttcttta aatttttcta gccttagtgt ttctttctta aatattaaaa      1500
     ttttaggcta acagcagcca tgagctatct attttttaaa tagagtttca tagttggtga      1560
     ctatataagg acctgacaac cagacacatg aagtgaacag gagtgctggc cattttatag      1620
     tgatggtttt gttggtgtat gaacttgacc agataggcag acacgggtca agtgatgcca      1680
     ctatcaagtt ggcagtgtga ctggtgagtc aagacaggct agggaagaca cagtgtttat      1740
     acggccacag aaaaccttgg gcacactctt acctccaagg ctatcccaag ggaactctga      1800
     gaacactatc aaaagagcca aggagggaaa gaagagccag agccagtcac cttttgagaa      1860
     ccctgtctgt gctgacttct cccataaact gaagatagag ctatcaggac ctacagggtt      1920
     gtggacaact cttagcatgt ggttctcagc aaaagcaccc acacttcaga tcccagcagc      1980
     gagaaacact ggtttgcttt tacagccacc caggggccgt tggctgaaga atcctcatcc      2040
     aggaagtggg ctctcagcac acccagacga tgctgccatt gcagagagtt ggcatgtgtc      2100
     tgcagttggc tggaagtgtg atgtgacaac ttcatcctta tgaggttgta actatctgtt      2160
     catttattta tgtttgaccc agggctgtac taagtagcct tggctgtcct ggaacccact      2220
     gtatagacca ggctgatctc aaactcacag agaccttcct gcctctacct ctgcctctgt      2280
     ttcctgaatg ctggaaaagt atgtattacc acacccagac caagagggtt tttagacaaa      2340
     aaaattctcc agttctctga gctcctttgt cttggagcag tggtctagac tagacacaca      2400
     ccgtgcactg gggactggcc tgagccaggc tggaaagtga acagaacgaa ggactcatgc      2460
     gtccagactg tcatgactgt tctcataaca aggtttcatt aatggtttca acaagagctt      2520
     tttctctttc tttttttggc cttggttttt ttgttgactc tgagtcctag gaaagtgatg      2580
     cacatagaat gttctaactg caaactctgc actgtctgtc tgtctgtcct ttactgccta      2640
     tgctcagcct ggaggactca ctatgatgag cctctagacc caaggaaagt cggggtgctc      2700
     ctctgtagca gcagtagagt gactgcccac cctggtatgc tgagtactta cagcagcact      2760
     tagtccatcc ttgccacctg aagggtccca accgaccgac accactttta tcaccacatg      2820
     ggaccattcg cccatatcac ctcaatttaa aacaaacagc ttacccatca ttcaaaatat      2880
     ctccaaactc tagggcaata aaactccatt atattccatg tccttgattt cacaaatgca      2940
     caaatcaaaa ctatatatat atatatatat acatatatat atatatgaag gcacagatat      3000
     attatattgt atataataaa ttgtatccat ccacattcca aaatagaaaa tttgtgatca      3060
     tttctttgtg gttttgacat gaggttatct tgaatttcct gcaaagacaa tctttacacc      3120
     agaatatgaa ctgatgaaag gagttcgaca gccagcttca tgactgtgga catgtttcat      3180
     gttgattcct gtctgtgcat gaaagcaatg cagtggagaa cttacttggg atttccttag      3240
     atttttattt tgcttccatg tatttcttag ttcacatact agactcataa gtactttaaa      3300
     gtatagactc gcttacttcc tcatatttcc tgtccccagg atcactggga cccaggggga      3360
     tcacttgact tttcagtgtt ataatgagga tgtgtttgtt gagtgcccac aagagaagga      3420
     atggacaccg catacggact ccagtgtaaa ctgtaccatg tctgtctatc taaaatttct      3480
     gatggggttt ctcatccagt cccatccttc aatatttacc tgtttttcct taaaggtttg      3540
     tttgaagcta aaatgacagc tcagtggcta tgagcacatc ctgctcttgc aggtgacctg      3600
     gattctatct ttcctcagca ccacattagg caacgcataa ccacatgtaa caccgtctct      3660
     aggggatctg atatctctgg cctgagcagc tgcctacagg catgcacaca tgtgcaaacc      3720
     tacacacatg tacatataat tttaaaataa taaatacagt gatttttttt aacctctagt      3780
     ttttatttta tttgtatgat tgtctacatg tgcatgaatt atgtacttgc agtacttgtg      3840
     taatccagaa gagggcacca aatcccctgg aactgtacag atatttgtga gccaccaagt      3900
     agttgatggg aattgaactc aggtcctctg acggaggagt cagtgctatt acacacagcc      3960
     atttctccag gcccagatac atttcttttc taaggtccat ttcctttgaa cttttcatta      4020
     agactgaggg agaaatggaa gttcacactc ctcagtgccc catgattctg gtcactctaa      4080
     tcagagaaag atactataat caaacggact gaatctctgt tatataatat ataactgtat      4140
     ataataatat taactaaatt gctaaatata gtaattattc atattttcat aagatgaact      4200
     cacacattac cattcatatg tatttagcat ctcctggcca acatttaaat catataccct      4260
     gcaaacctag agcatggaac acctgatgca caaggagtga atatcaatta attattgcac      4320
     ttccgtctca atgcaaagat atattgataa acaacattat aagatgcaaa tgtggatttg      4380
     tgtctccagt atgcaattca aatatttgtg ggatgctttc cattaccctt taaaatattt      4440
     tttaaattac gcg                                                         4453
//