Dbfetch
ID AK134550; SV 1; linear; mRNA; HTC; MUS; 892 BP. XX AC AK134550; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched DE library, clone:6330409C14 product:glutamate receptor, ionotropic, kainate 5 DE (gamma 2), full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-892 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 7718f0291b9591c14344a5c4e345767d. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=6330409C14 XX FH Key Location/Qualifiers FH FT source 1..892 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="6330409C14" FT /tissue_type="medulla oblongata" FT /db_xref="taxon:10090" FT CDS <5..376 FT /codon_start=1 FT /transl_table=1 FT /note="glutamate receptor, ionotropic, kainate 5 (gamma 2) FT (MGD|MGI:95818 GB|BC058097, evidence: BLASTN, 100%, FT match=889)" FT /note="putative" FT /note="start codon is not identified" FT /db_xref="MGI:MGI:95818" FT /db_xref="UniProtKB/TrEMBL:Q3UYN0" FT /protein_id="BAE22182.1" FT /translation="KTSRSRRRRRPGGPSRALLSLRAVREMRLSNGKLYSAGAGGDAGA FT HGGPQRLLDDPGPPGGPRPQAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGTPAEAT FT SPPRPRPGPTGPRELTEHE" FT regulatory 870..875 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 892 FT /note="putative" XX SQ Sequence 892 BP; 147 A; 318 C; 298 G; 129 T; 0 other; ggaaaagacc tcgcgttccc gccggcgccg gcgccctggt ggcccgagcc gggccctgct 60 gtcgctgcgc gcagtccgcg agatgcgact cagcaacggc aagctctact cggccggcgc 120 gggcggggac gcgggcgcgc acgggggtcc gcagcgcctc ctggacgacc ccggacctcc 180 tgggggaccc cggccccagg ctcccacgcc ctgcacgcac gtgcgcgtct gccaggagtg 240 caggcgcatc caggcgctgc gagcttcggg ggccggggcg cccccacgtg gcctgggcac 300 cccagccgaa gccaccagcc cgcctcggcc gcggccaggc cccaccggac cccgcgagct 360 gaccgagcac gaatgaccgt ggacggggcc gggcgtgcgc cccgactgac tgcagggacg 420 cgatgcgccc cagacggaca ggacgccgcg attttgcctt caattcctgg tgaagtccga 480 gcccggctcc ggagcaggcc tgcgcctcct agtggacttg agcaagggtg tcgcggacgc 540 ccgcattcta tcccgcaccg tggacgggag gagcgcagag accgaggact ctaagggcca 600 cggactgtgg gggctgctcc cggagttgga aagcggtccg cggggaggac cccaacctgg 660 gactgcccag atgccccaag acttgacacg gctctccaca cttctggagg tggggagggc 720 ctctggacat gtgggtgtcc cctggtgccc ctctcttctc tttctctctt ttttgggggg 780 agaaacctca gaaatttcta tgagacgccc ccagggagag ggtctcttgg gcccctatac 840 ctccccctgc cacatcccag tcctgttgga ataaaaaaaa gaacaaaacc cc 892 //