Dbfetch
ID AK132917; SV 1; linear; mRNA; HTC; MUS; 1712 BP. XX AC AK132917; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus adult male testis cDNA, RIKEN full-length enriched library, DE clone:4930515I20 product:G protein-coupled receptor 19, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1712 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; fbd729515e8af51eb6137c7634a4f6d8. DR Ensembl-Gn; ENSMUSG00000032641; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0031409; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0031385; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0031312; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0031391; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0031113; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0031851; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0030482; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0031072; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0031230; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0031180; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0031314; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0031220; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0031884; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0030207; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0030573; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000046255; mus_musculus. DR Ensembl-Tr; ENSMUST00000111932; mus_musculus. DR Ensembl-Tr; ENSMUST00000116515; mus_musculus. DR Ensembl-Tr; ENSMUST00000165392; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0080578; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0080668; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0080590; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0080604; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0080220; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0081077; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0080773; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0080167; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0080326; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0080208; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0080358; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0080224; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0081346; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0080209; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0079301; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=4930515I20 XX FH Key Location/Qualifiers FH FT source 1..1712 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="4930515I20" FT /tissue_type="testis" FT /db_xref="taxon:10090" FT CDS 432..1661 FT /codon_start=1 FT /transl_table=1 FT /note="G protein-coupled receptor 19 (MGD|MGI:892973 FT GB|NM_008157, evidence: BLASTN, 99%, match=1374)" FT /note="putative" FT /db_xref="GOA:Q61121" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:892973" FT /db_xref="UniProtKB/Swiss-Prot:Q61121" FT /protein_id="BAE21421.1" FT /translation="MDNDQPPVVTATLLVPLQNSSCAEAAEALLPHGLMGLHEEHSWMS FT NRTELQYELNPGEVATASIFFGALWLFSIFGNSLVCLVIHRSRRTQSTTNYFVVSMACA FT DLLISVASTPFVVLQFTTGRWTLGSAMCKVVRYFQYLTPGVQIYVLLSICIDRFYTIVY FT PLSFKVSREKAKKMIAASWILDAAFVTPVFFFYGSNWDSHCNYFLPPSWEGTAYTVIHF FT LVGFVIPSILIILFYQKVIKYIWRIGTDGRTLRRTMNIVPRTKVKTVKMFLLLNLVFLF FT SWLPFHVAQLWHPHEQDYKKSSLVFTAVTWVSFSSSASKPTLYSIYNANFRRGMKETFC FT MSSMKCYRSNAYTITTSSRMAKRNYVGISEIPPVSRTITKDSIYDSFDREAREKKLAWP FT INSNPPNTFV" FT regulatory 1696..1701 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1712 FT /note="putative" XX SQ Sequence 1712 BP; 394 A; 472 C; 433 G; 413 T; 0 other; gggccccgtc ggcccccgag ggatgtcagt caggggacgt ggaacacctg cacaaactgg 60 atttttgccc tatcacgact ctgagaaagc atttgggtgt tggcactata aagattgagg 120 ttattttgta tttgctgtta ttggagttgc agcttcctat accaaatgca gtgtcatcct 180 gggggtctgg cagctaatga cctatggaca aaagacaccc tctaaccaca gttggctcag 240 ctgaaagtag aagatatcag tctgtgataa tccagaagca ggctgagggc tgagggaagg 300 caaaggggag atatgaatgt gttccgaagg tttcccggtg gctcatggca tcctccaaag 360 tcctgcctgc gagctgttcc tgaccaagaa aacccgcgga gcctgactct gaaatccagt 420 cccgatgaag aatggataac gaccagccgc ctgtggtgac tgccaccctg ctggtgcccc 480 ttcagaacag cagctgcgcg gaagcagctg aggccctgct gccccatggc ctgatgggat 540 tgcatgagga gcacagctgg atgagcaaca ggacagagct tcagtacgag ctgaaccctg 600 gagaggtggc caccgccagc atcttctttg gcgctttgtg gttgttctcc atctttggca 660 attccctggt atgtctggtc atccaccgga gccggaggac tcagtccacc accaactact 720 tcgtggtgtc catggcgtgt gctgaccttc tcatcagcgt ggccagcacg ccgtttgtcg 780 tgctgcagtt caccaccggg aggtggaccc tgggtagcgc catgtgcaag gtggtccgct 840 acttccagta cctcaccccc ggcgtgcaga tctacgtgct gctctccatc tgcatcgacc 900 gcttctatac catcgtctac ccgctgagct tcaaggtgtc ccgagagaag gccaagaaaa 960 tgattgcagc ctcctggatc ttggacgcgg ccttcgtgac gcctgtcttc tttttctacg 1020 gctctaactg ggatagtcac tgtaactact tcctccctcc ctcctgggag ggaactgcct 1080 ataccgtcat ccacttcttg gtgggcttcg tgattccctc catcctcata atcctgtttt 1140 accagaaggt cataaagtat atctggagaa taggcacgga cgggcggacg ctgagaagga 1200 cgatgaacat tgtccccagg acaaaggtga aaacggtcaa gatgttcctg ctcttgaacc 1260 tagtgttcct gttctcctgg ctacctttcc atgtggctca gctctggcat ccccatgagc 1320 aagactacaa gaagagctcc cttgtcttca cggcagtcac gtgggtatct ttcagctctt 1380 cagcctcgaa acccactctg tactctattt ataatgccaa ttttcggaga gggatgaaag 1440 agacattctg catgtcctcg atgaaatgct accgcagcaa tgcctacacc atcacgacca 1500 gctcacggat ggccaaaaga aactatgtgg gcatttcgga aatccctccc gtgagcagga 1560 ccataaccaa agactccatc tatgactcat ttgaccggga ggccagggag aagaagctcg 1620 cctggcccat caactcaaac cctccaaaca cttttgtctg atttctaaga agtctttcac 1680 tgttatgtgc cagagattaa aaagctttca ct 1712 //