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EBI Dbfetch

ID   AK132305; SV 1; linear; mRNA; HTC; MUS; 3960 BP.
XX
AC   AK132305;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE   Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library,
DE   clone:4021404H12 product:forkhead box G1, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3960
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; f1485a5ea5b0a65d006b696b08635e12.
DR   Ensembl-Gn; ENSMUSG00000020950; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000021333; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000179669; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=4021404H12
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3960
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="15 days embryo"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="4021404H12"
FT                   /tissue_type="head"
FT                   /db_xref="taxon:10090"
FT   CDS             1592..3037
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="forkhead box G1 (MGD|MGI:1347464 GB|BC064449,
FT                   evidence: BLASTN, 99%, match=2877)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q3V1Q8"
FT                   /db_xref="InterPro:IPR001766"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="InterPro:IPR018122"
FT                   /db_xref="MGI:MGI:1347464"
FT                   /db_xref="UniProtKB/TrEMBL:Q3V1Q8"
FT                   /protein_id="BAE21092.1"
FT                   /translation="MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHP
FT                   QHHHHHHHHHHPPPPAPQPPPPPPQQQQQQPPPAPQPPQARGAPAADDDKGPQPLLLPP
FT                   STALDGAKADALGAKGEPGGGPAELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKE
FT                   GDKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIR
FT                   HNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRG
FT                   ARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQN
FT                   SLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSV
FT                   NLLAGQTSYFFPHVPHPSMTSQTSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTG
FT                   LSGGLSDYFTHQNQGSSSNPLIH"
FT   regulatory      3940..3945
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      3960
FT                   /note="putative"
XX
SQ   Sequence 3960 BP; 831 A; 1261 C; 1046 G; 822 T; 0 other;
     tttccagcag catccaagaa gggtaagagc tgatttcgcc ctactggtgt ttcaagattg        60
     aggttttaaa gagataaagt atttgtgaaa tgggaaaaag gagcaaacat aggatttaaa       120
     aaaaaaaaaa acggaagtag acgcccactc atattttctt caatgtcaag caaaatgaaa       180
     atatttccag gatgatcgat cgcggctacc ggcttccagt actgcctaga agctgaagag       240
     gaggtggagt gcccgaggag acaactgcca ccgggtcacc cgcgcgtgag cgcgactctg       300
     ggagtgaagc gagacggagg gagaacacac gtgttacctg ctttatttcg ggactgtttg       360
     ggtctgtgct cgcccggggc agctctccgc ccgcccgccc gcgtgcgtgg aaggcctcca       420
     cagaacgcac ccaccgctca gccgcccccg ctcgccgccc tcagcccagc ttcacagccg       480
     agctcgccgc gggccgcagg aagctgtaag taccggcctg gccgtggccg cccccgcccc       540
     accttccagg ccccgttccc ccgatgcccg gctctccgga gcttgctggc ccgctcgctc       600
     ccagggcgct gccggggccg ccgcgtcccc agggttcacg ccctctcccg caccctcgca       660
     gctcgcccct ccgccgcgcc ccccgccccg ctcttccaga caaaattgga tacaaacttt       720
     aatcaataag gataaatatt gacgcgcaaa ggaaaataat cccatacagg gaggaggcca       780
     cagtcgagcg gccgcggccc ggggcgcacg ccccacgcta atcctggccg ggtgggcgat       840
     ctcccgccgg tccccgcggc tccaggcctg ggccccgcca cccggagggg gcggtgagcg       900
     gggggcgggg ccggggcggg gcggggatgg gcgggccctg ggcccccgat tggtcgacgg       960
     ctagccagac gctcctgcac gccggcggca ctgattggtt cggcagtagg aaaggttaaa      1020
     ccaaaaattt ttttacagcc ctagtgtgcg cctgtagctc ggaaaattaa ttgtggctat      1080
     agctgcctcg atcgctgtct cctagcctcg ctgcggccgc tccgggacgc gcccgcccgc      1140
     cgcccggctc tccccccctt cgggctgccg ctgctgctgc tgtgactgct gcggcgcgag      1200
     gaggaggagg cagcggggga gggggaggcc gggcgcggaa cggagcgggg cgctgcaccc      1260
     cgggcgacgg gttgcttctg cctctagcct ccctctctct ctctctctct ctctctctct      1320
     ctctctctct ctctctctct ctctctccct ctctctctct ctctccctct ctctttctct      1380
     ctctaattct tgaggggtgg ttgcagcttt tgctacatgc cttgccagcg ccggagcctg      1440
     cggtccaact gcgctgctgc cggagcgctc agtgccgcct ccgctgcccg ctccccccgc      1500
     gccccactcc gaacccgctg gtcgcccgcc gcgctgctgc ccggctcccg tgccgccgcc      1560
     gccgccgccg ccgccccccg acgcctgggt gatgctggac atgggagata ggaaagaggt      1620
     gaaaatgatt cccaagtcct cgttcagcat caacagcctg gtccccgagg ccgtccagaa      1680
     cgacaaccac cacgcgagcc acggccacca caacagccac cacccccagc atcaccatca      1740
     tcatcaccac caccaccacc cgccgccgcc cgcgccccag ccgcctccac cgccgcccca      1800
     gcagcagcag cagcagccgc ccccggcccc gcagcccccg caggcgcgcg gcgccccagc      1860
     agccgacgac gacaagggtc cccagccgct cctgctcccg ccctccaccg ccctggacgg      1920
     ggccaaggct gacgcacttg gagccaaagg cgagccgggc ggcgggccgg cggagctggc      1980
     gcccgtcggg ccggacgaga aggagaaggg cgcgggcgcc gggggggagg agaagaaagg      2040
     ggcgggcgag ggcggcaagg acggggaggg gggcaaggag ggcgacaaga agaacggcaa      2100
     gtacgagaag ccgccgttca gctacaacgc gctcatcatg atggccatca ggcagagtcc      2160
     cgagaagcgc ctgacgctca atggcatcta tgagttcatc atgaagaact tcccctacta      2220
     ccgcgagaac aagcagggct ggcagaactc catccgccac aacctgtccc tcaacaagtg      2280
     cttcgtgaag gtaccgcgcc actacgacga cccgggcaag ggcaactact ggatgctcga      2340
     cccgtcgagc gacgacgtgt tcatcggcgg cacgaccggc aagctgcggc gccgctccac      2400
     cacgtctcgg gccaagctgg cctttaagcg cggggcgcgc ctcacctcca ccggcctcac      2460
     cttcatggac cgcgccggct ccctctactg gcccatgtcg cccttcctgt ccctgcacca      2520
     cccccgcgcc agcagcactt tgagttacaa cgggaccacg tcggcctacc ccagccaccc      2580
     catgccctac agctccgtgt tgactcaaaa ctcgctgggc aacaaccact ccttctccac      2640
     cgccaacggg ctgagtgtgg accggctggt caacggggag atcccgtacg ccacgcacca      2700
     cctcacggcc gctgcgctcg ccgcctcggt gccctgcggc ctgtcggtgc cctgctccgg      2760
     gacctactcc ctcaacccct gctccgtcaa cctgctcgcg ggccagacca gttacttttt      2820
     cccccacgtc ccgcacccgt caatgacttc gcagaccagc acgtccatga gcgcccgggc      2880
     cgcgtcctcc tctacgtcgc cgcaggcccc ctcgaccctg ccctgtgagt ctttaagacc      2940
     ctctttgcca agttttacga caggactgtc cgggggactg tctgattatt tcacacatca      3000
     aaatcagggg tcttcttcca accctttaat acattaacat ccgggggacc agactgtaag      3060
     tgaacgtttt acacacattt gcattgtaaa tgataattaa aaaaataagt ccaggtattt      3120
     tttattaagc cccccctccc catttctgta cgtttgttca gtctttaggg ttgtttacta      3180
     ttctaacacg gtgtggagtg tcagcgaggt gcaatgtggg agaatacatt gtagaatata      3240
     aggtttggac gtcaaattat agtagaatgt gtatctaaat agtgactgct ttgccatttc      3300
     attcaaacct gacaagtcta tctcaacagg ctgccagatt tccatgtgtg cagtattata      3360
     agttatcatg gagctatctg gtggacgcag gccttgagaa caacctaaat tatgaagaga      3420
     gttttaaaat gttaaattgt aatttgtatt taagaatttg tagtaaaggt gcccaaggaa      3480
     ttatattggc catttattgt tttgtccttt ttctttaaag aactgtttct ttccttttgt      3540
     ttacttttag accaaagatt ggattctagc aaatgcactt ggtatactaa gtattaaaac      3600
     aagtaaacaa acaaacgaaa aaggaaggtt gtttagttgg caacactgcc cattcaattg      3660
     aatccgaagg agacaaaatt aaggattgcc ttcagtttgt gttgtgtata tttcgatgta      3720
     tgtggtcact aacaggtcac ttttattttt tctaaatgta gtgaaatgtt aatacctatt      3780
     gtacttatag gtaaaccttg caaatatgta acctgtgttg cgcaaatgcc gcatcaattt      3840
     gagtgattgt taatgttgtc ttaaaatttc ttgattgtga tactgtggtc atatgcccgt      3900
     gtttgtcact tacaaaaatg tttactatga acacacagaa ataaaaaata ggctaaattc      3960
//


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