Dbfetch

ID   AK083832; SV 1; linear; mRNA; HTC; MUS; 3688 BP.
XX
AC   AK083832;
XX
DT   19-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 15)
XX
DE   Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
DE   enriched library, clone:D130017L13 product:ceroid-lipofuscinosis, neuronal
DE   2, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3688
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-APR-2002) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; f58ec78b3868bbde9920ffceff565075.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=D130017L13
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3688
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="12 days embryo"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="D130017L13"
FT                   /tissue_type="spinal ganglion"
FT                   /db_xref="taxon:10090"
FT   CDS             2012..2974
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="ceroid-lipofuscinosis, neuronal 2 (MGD|MGI:1336194
FT                   GB|NM_009906, evidence: BLASTN, 100%, match=2014)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8BNF3"
FT                   /db_xref="InterPro:IPR000209"
FT                   /db_xref="InterPro:IPR030400"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BNF3"
FT                   /protein_id="BAC39034.1"
FT                   /translation="MRLFGGSFTHQASVAKVVGKQGRGRAGIEASLDVEYLMSAGANIS
FT                   TWVYSSPGRHEAQEPFLQWLLLLSNESSLPHVHTVSYGDDEDSLSSIYIQRVNTEFMKA
FT                   AARGLTLLFASGDTGAGCWSVSGRHKFRPSFPASSPYVTTVGGTSFKNPFLITDEVVDY
FT                   ISGGGFSNVFPRPPYQEEAVAQFLKSSSHLPPSSYFNASGRAYPDVAALSDGYWVVSNM
FT                   VPIPWVSGTSASTPVFGGILSLINEHRILNGRPPLGFLNPRLYQQHGTGLFDVTHGCHE
FT                   SCLNEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP"
XX
SQ   Sequence 3688 BP; 915 A; 968 C; 829 G; 976 T; 0 other;
     gactacagat cagcctgaaa gccaaaatgg gactccaagc ccgcctccta gggctccttg        60
     ctctcgtcat cgccggcaaa tgcacttaca accctgagcc ggaccagcgg tggatgctgc       120
     ctccaggctg ggtgtccctg ggccgcgtgg atcccgagga agagctgagt ctcacttttg       180
     cgctgaaaca gcggaacctg gaaagactct cggagctggt gcaggctgtg tcggatccta       240
     gctctcctca atatggtgcc tatcagttgg ggcaggaagt gggaggcagg accaggcagg       300
     cactggctgg tgcagatcat gtagggccat gtttctggta tgacagacaa atgacaataa       360
     ctgccatatt catacacaca cacacacaca cacacacaca cacacacaca caccaaaatt       420
     tccacctgag ttcttcagtc ttaaaactaa gaacaaatct aagcctagta gcatgaggta       480
     ataatcctag ctacttggac taaaacagga cgattttgaa tccaaggcat gcctgggcag       540
     tgtagcaata ttgtcaacat taaaaccaat tttttttaga ggcctagcta gctcattgat       600
     agggtgggtg cttacggagc atatgaaaaa ccctaggttc aagtgccagg aagatggtgg       660
     gtgtggggta gctagctgtg tttaagaaca catgattcat aatcagatct agattgaaat       720
     gttcacttac cctaccagct ctcaaatgga ggactagcac ttagtgtgtg tgcatgatca       780
     agtcatggac cttaccccac tctcatagcc actgccacac cctcctctgt tgctagttca       840
     agtcctaaat tgtctttgga ttaatccact ctggccattc ctcttgctac caactcagtt       900
     gtttattctc tttctggatt actgcccagt acccggactg gtttgaagct tcctctcctt       960
     caccccactc cccagaacag tcccttctct attctagagt attctctatg gtgctcaggc      1020
     tggagtgaat ccttcccctg cttaaagtcc tgtatggtga ggcaagggtg tgtgtgtgtg      1080
     tgtgtgtgtg tagaatggag gcgagaggag gggggggcat ccttagagca cccaagaagc      1140
     tcctcatatg caggaaagaa tgactcaccg ttatgttgtt taaaatcaac aaggatgaag      1200
     agctgagcta aattagaagg ttctgtataa ctggctccaa aagtttgggg aaatcttttt      1260
     gaagataagc ttaaaatggg atattgaaag tttactaacg tccttgagtt tttgtgacca      1320
     tggtaacaca tgctgtgcat ttttcctggc catgacgttt catgtctctc gagccttttc      1380
     ttccctttga ctctcactat gcctagccct acacagtcct cctcgggaag ttttgatgtc      1440
     ctctgattga ggtccagaca gacaacccag gaaagcctca aatgaggacg agagcctctt      1500
     ctgaatccct gcaggaaagt acctaaccct ggaggatgta gctgagctgg ttcaaccatc      1560
     acccctgacc ctcctcactg tccaaaagtg gctctcagca gctggagccc ggaactgcga      1620
     ttcagtgacc acccaggact ttctgacttg ctggctgagt gtccgacagg ctgagctgct      1680
     gctcccagga gctgagtttc atcgctatgt agggggacct acaaagaccc atgttataag      1740
     gtccccacat ccctaccagc ttccccaggc cttggcccct catgtggatt ttgtgggggg      1800
     gctgcaccgt ttcccccctt catctccaag acaacgtcca gaaccacaac aggtaggaac      1860
     tgttagcctg cacttgggag tgactccgtc tgtgctccgt cagcgataca acctgacagc      1920
     caaagatgtg ggctcaggca ccaccaacaa tagccaggcc tgtgcccagt tcctggaaca      1980
     gtacttccat aactcggatc tgactgagtt catgcgccta ttcggtggca gttttacaca      2040
     ccaggcctca gtagcaaaag ttgttggaaa gcaagggcga ggccgagctg ggatcgaggc      2100
     cagtctagat gtggaatacc tgatgagtgc tggtgccaat atctccactt gggtctacag      2160
     tagccctggc cgccatgagg cacaggagcc cttcttacaa tggctcctgc ttcttagcaa      2220
     tgagtcatct ttgccacatg tacatactgt gagttacgga gacgatgaag actccctcag      2280
     cagcatctac atccagagag tcaacactga gttcatgaag gctgctgctc ggggtctcac      2340
     cctccttttt gcctcaggtg acactggagc tgggtgttgg tctgtctccg gaagacacaa      2400
     gttccgccct agcttccctg cttccagccc ctatgttact acagttggag gaacctcctt      2460
     caagaatcct ttcctcatca cagatgaagt agttgactat atcagtggtg gaggcttcag      2520
     caatgttttc ccacggcctc cctaccagga ggaagcagtg gcccagttct tgaaatccag      2580
     ctctcatcta ccaccatcca gttacttcaa tgctagtggc cgtgcctacc cagatgttgc      2640
     cgcactatct gatggctact gggtggtcag caacatggtc cccattccat gggtatctgg      2700
     aacctcggcc tctactccag tgtttggggg aattttatcc ttgataaatg agcacagaat      2760
     cctcaatggc cgccctcctc ttggctttct caaccccagg ctctatcagc agcatgggac      2820
     aggactcttt gatgtaaccc acggctgcca tgagtcctgt ctgaatgaag aagtggaggg      2880
     tcagggtttc tgctctggtc ctggctggga tcctgtgaca ggttggggaa cacccaactt      2940
     cccagcccta ctgaagaccc tgctcaaccc ttgacccttt cgtgccatga cgagaaagca      3000
     gaactgttcc ctgtactaaa agggaaggct cagtttcttg ttattcctcg atagaagccc      3060
     tgctgaactc ctgttgcctg ctgcagatag cttctcccta accctcagat gctgtgaaca      3120
     ggactcaact ctcaatccta ctgtgtgcca tcaaactcag gtctccaaac ttctacttca      3180
     agatcctcaa caagatgcta taaccagcat attttgtctc accccaaccc catctctcct      3240
     tcctctttcc agcttgagat gtgaaagcag ggcaagaagg ttcagtcttc cattactgac      3300
     actagcaggt ccacccaacg cttaccacct ctgcactgac cgtacactct atttctcttc      3360
     gggtttgctt ttccgttcac tgaagtgaga cctttgacta atcgttttgt ctttcttctc      3420
     tcggcactga agtacaatgg tctccccaat gttttatcca gttataccct tttcagtgtt      3480
     tgttttatgg gttttcttat ttaagaacag gttgtcaaaa aaccattaaa aaaaaaaaag      3540
     aaaaagaaca cattggctgc aatctattta actatataac tattctaagg aaagttaaaa      3600
     attgaaaact taaaatgttt gaaatgttct cattggcaaa attcctcaac aaaataaata      3660
     ggtcattaca aattttgctt taaatttc                                         3688
//