Dbfetch

ID   AK082137; SV 1; linear; mRNA; HTC; MUS; 3573 BP.
XX
AC   AK082137;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 15)
XX
DE   Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched
DE   library, clone:C230012M10 product:1-ACYL-SN-GLYCEROL-3-PHOSPHATE
DE   ACYLTRANSFERASE EPSILON (EC 2.3.1.51) (1-AGP ACYLTRANSFERASE 5) (1-AGPAT 5)
DE   (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE-EPSILON) (LPAAT-EPSILON)
DE   (1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 5), full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3573
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-APR-2002) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; dfbf17c534cc8800ba0067031a19e48f.
DR   Ensembl-Gn; ENSMUSG00000031467; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000149565; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=C230012M10
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3573
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="0 day neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="C230012M10"
FT                   /tissue_type="cerebellum"
FT                   /db_xref="taxon:10090"
FT   CDS             57..1154
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
FT                   EPSILON (EC 2.3.1.51) (1-AGP ACYLTRANSFERASE 5) (1-AGPAT 5)
FT                   (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE-EPSILON)
FT                   (LPAAT-EPSILON) (1-ACYLGLYCEROL-3-PHOSPHATE
FT                   O-ACYLTRANSFERASE 5) (SWISSPROT|Q9D1E8, evidence: FASTY,
FT                   100%ID, 100%length, match=1062)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q9D1E8"
FT                   /db_xref="InterPro:IPR002123"
FT                   /db_xref="InterPro:IPR032098"
FT                   /db_xref="MGI:MGI:1196345"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9D1E8"
FT                   /protein_id="BAC38421.1"
FT                   /translation="MLLSLVLHTYSMRYLLPSVLLLGSAPTYLLAWTLWRVLSALMPAR
FT                   LYQRVDDRLYCVYQNMVLFFFENYTGVQILLYGDLPKNKENVIYLANHQSTVDWIVADM
FT                   LAARQDALGHVRYVLKDKLKWLPLYGFYFAQHGGIYVKRSAKFNDKEMRSKLQSYVNAG
FT                   TPMYLVIFPEGTRYNATYTKLLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDSMKSHL
FT                   DAIYDVTVVYEGNEKGSGKYSNPPSMTEFLCKQCPKLHIHFDRIDRNEVPEEQEHMKKW
FT                   LHERFEIKDRLLIEFYDSPDPERRNKFPGKSVHSRLSVKKTLPSVLILGSLTAVMLMTE
FT                   SGRKLYMGTWLYGTLLGCLWFVIKA"
XX
SQ   Sequence 3573 BP; 939 A; 716 C; 775 G; 1143 T; 0 other;
     ggtcctggtg gccgcgcggg caacgcaggc ggagtcgcgg ctggcgagcc gagaggatgc        60
     tgctgtccct ggtgctccac acgtactcta tgcgctacct gctccccagc gtcctgttgc       120
     tgggctcggc gcccacctac ctgctggcct ggacgctgtg gcgggtgctc tccgcgctga       180
     tgcccgcccg cctgtaccag cgcgtggacg accggcttta ctgcgtctac cagaacatgg       240
     tgctcttctt cttcgagaac tacaccgggg tccagatatt gctatatgga gatttgccaa       300
     aaaataaaga aaatgtaata tatctagcga atcatcaaag cacagttgac tggattgttg       360
     cggacatgct ggctgccaga caggatgccc taggacatgt gcgctacgta ctgaaagaca       420
     agttaaaatg gcttccgctg tatgggttct actttgctca gcatggagga atttatgtaa       480
     aacgaagtgc caaatttaat gataaagaaa tgagaagcaa gctgcagagc tatgtgaacg       540
     caggaacacc gatgtatctt gtgattttcc cagagggaac aaggtataat gcaacataca       600
     caaaactcct ttcagccagt caggcatttg ctgctcagcg gggccttgca gtattaaaac       660
     acgtactgac accaagaata aaggccactc acgttgcttt tgattctatg aagagtcatt       720
     tagatgcaat ttatgatgtc acagtggttt atgaagggaa tgagaaaggt tcaggaaaat       780
     actcaaatcc accatccatg actgagtttc tctgcaaaca gtgcccaaaa cttcatattc       840
     actttgatcg tatagacaga aatgaagttc cagaggaaca agaacacatg aaaaagtggc       900
     ttcatgagcg ctttgagata aaagataggt tgctcataga gttctatgat tcaccagatc       960
     cagaaagaag aaacaaattt cctgggaaaa gtgttcattc cagactaagt gtgaagaaga      1020
     ctttaccttc agtgttgatc ttggggagtt tgactgctgt catgctgatg acggagtccg      1080
     gaaggaaact gtacatgggc acctggttgt atggaaccct ccttggctgc ctgtggtttg      1140
     ttattaaagc atgagcaagt agcaggctgc agtcacagtc tcttattgat ggctacacgt      1200
     tgtatcacat tgtttcctga attaaataag gagttttctt gttgttgttt ttttgttttg      1260
     ttttgttctg ttttaagcct tgatgattga acactggata aagtagagtt tgtgaccaca      1320
     gccaacatgc atttgatttg gggcaaacac atgtggcttt tcaggtgctg gggttgctgg      1380
     agacatggaa gctaagtgga gtttatgctg tttttttttt tttaatgttt tcatgaatta      1440
     atctccactt gtaaagatta ttggatactt tctgtaattc agaaggttgt attttaacac      1500
     tagtttgcag tatgtttcgc tatattggtt atcttccatt tgactacttg gcagctcaga      1560
     ctcttaatac taaagtattt tacattttga agctatgtga tactggtttt ttgttgttgt      1620
     tgttgttagt ttctgaaagt caatgaaaga cactgtaatg atgcgttaag atgttccaag      1680
     aaaaaggtga gaattattca tggcaaaaaa gatctgtcta gtgtatattt ttattatatt      1740
     gctctattta gctaattttc tttatatttg caaaataatg aacattttta atatttatta      1800
     aaatgcttga tttgcatacc cccgattcta cagagaataa tgtgtaaagt gtcagaatag      1860
     acttgaagct ctgctgtgac tcagtctcct ttgtcagagc ttctagtagc ccagctactg      1920
     agctgctttg ttagtacctc cagcacctga gccgttaagt acttataaat gcaagggacc      1980
     cgttatcttc atatcggaat agacatgaac agagctctaa ggcgatgaaa gtctgccagc      2040
     atcctctctg tcctcgcacg tgccttctgc ctggctccat ttgctttggc actgcgttcg      2100
     atctagagtg taggtgctca ctgcttattt cagccctggc tctgtggttt tgtgtcctcc      2160
     agtggtgctg ttcactgttg gggtgcaggt ggtgctgccc tgactcagag gggcagctcc      2220
     ctggctcctg agggtgagcc ttcttggcta ctacagaagt attgtgcgtt tgtttatggc      2280
     aagaaccatc aggattggat aaatgtgtta tttctctttg atttccatgg agccacactg      2340
     ttggtacatg tcccctgtga acagagctac ctttcaggag cacatcatac tgtcgtgagt      2400
     cacggcacgg tgtgtcctgt gagaagaggc tttctaacgt gtgatttgcc gtgtttctat      2460
     gttgtgattt aagcgtgatt gcctactagt cattcaaggt aacatttctg caaatttcat      2520
     acagattttt gtcacaaaat tactatacca atgatctagt tgaaatagac caattgaatc      2580
     acaataaata atttttttta attgagggaa aatttgcttc ttgttttttc aaagccagaa      2640
     aacgagccat ttcaaacatc tttgaagagt catgtgctgt cacttgtttt ctatgtgtta      2700
     gtgtctatat tcatgtatgg atacacatga acatgtatat tcatacacac acgccaatag      2760
     aatataacag cctaaaaaca atccagcttg tgtatcatgt tactgtgctg aattgtaatg      2820
     gtttttactt acaaagtgag gctaaaatcg atttcatgtc tttgttaaat acgttttttc      2880
     agcaatccta ttagagctta ttttgaccag atcaaaataa gtacaagttc agagacttta      2940
     aatatggctg aggtctagag cgatagctca gtagttagga acacatgcca ctctttcaag      3000
     ggcttcagtt cccagcactc atatggaggc tcacagaagg gctggaattc cagcttcatg      3060
     gaattggaca catcctctag cttccatgga tctgtctgtc tgtctctccc ttctctctct      3120
     ctctctctct ctctctctct ctctctctct ctctctcact cactctttaa atatcatgga      3180
     tatgctgtgc atttaaattt taagacacag aaccattgga attacatgga ttatagctga      3240
     ttctctttga acagggcaca gtgttctgcg taagatctct tgatcattag cactggactc      3300
     actctcctca caagtagcct atcaaatgtg gtattagaaa atacattgtg tcaaaatctt      3360
     tgaaagatga gaagaatctc ctaaacatgt ttattttgac ttgacatcac tatttcctga      3420
     aaattaactg tctatgattc ttttcacata gtgtaagatc ttacttgtat caccatcagc      3480
     ttgcagctta ggggctgcag ttgttctcct tcataagact gccatccgtg tgcatgcttt      3540
     tatgtttttc agaaaggatg ttgggatgaa agt                                   3573
//