Dbfetch
ID AK052685; SV 1; linear; mRNA; HTC; MUS; 1419 BP. XX AC AK052685; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, DE clone:D630023D24 product:renin 1 structural, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1419 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; ec926f0910dec68dc5cf474f21b48754. DR Ensembl-Gn; ENSMUSG00000070645; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0016485; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0016468; mus_musculus_aj. DR Ensembl-Gn; MGP_BALBcJ_G0016428; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0016254; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0016889; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0015834; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0016228; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0016333; mus_musculus_dba2j. DR Ensembl-Gn; MGP_LPJ_G0016404; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0016357; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0016925; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015620; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0015896; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000094556; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0022138; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0022106; mus_musculus_aj. DR Ensembl-Tr; MGP_BALBcJ_T0022078; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0021884; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0022591; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0021414; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0021831; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0021956; mus_musculus_dba2j. DR Ensembl-Tr; MGP_LPJ_T0022058; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0021942; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0022625; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0021149; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0021461; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=D630023D24 XX FH Key Location/Qualifiers FH FT source 1..1419 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="0 day neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D630023D24" FT /tissue_type="kidney" FT /db_xref="taxon:10090" FT CDS 33..1241 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="renin 1 structural (MGD|MGI:97898 GB|NM_031192, FT evidence: BLASTN, 100%, match=1400)" FT /db_xref="GOA:P06281" FT /db_xref="InterPro:IPR001461" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR012848" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR033121" FT /db_xref="InterPro:IPR034135" FT /db_xref="MGI:MGI:97898" FT /db_xref="PDB:5MKT" FT /db_xref="UniProtKB/Swiss-Prot:P06281" FT /protein_id="BAC35094.1" FT /translation="MDRRRMPLWALLLLWSPCTFSLPTRTATFERIPLKKMPSVREILE FT ERGVDMTRLSAEWGVFTKRPSLTNLTSPVVLTNYLNTQYYGEIGIGTPPQTFKVIFDTG FT SANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGSDFTIHYGSGRVKGFLSQDSVTV FT GGITVTQTFGEVTELPLIPFMLAKFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEEVF FT SVYYNRGSHLLGGEVVLGGSDPQHYQGNFHYVSISKTDSWQITMKGVSVGSSTLLCEEG FT CAVVVDTGSSFISAPTSSLKLIMQALGAKEKRIEEYVVNCSQVPTLPDISFDLGGRAYT FT LSSTDYVLQYPNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFA FT LAR" FT regulatory 1403..1408 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1419 FT /note="putative" XX SQ Sequence 1419 BP; 313 A; 416 C; 365 G; 325 T; 0 other; acacagctct tagaaagcct tggctgaacc agatggacag aaggaggatg cctctctggg 60 cactcttgtt gctctggagt ccttgcacct tcagtctccc aacacgcacc gctacctttg 120 aacgaatccc gctcaagaaa atgccttctg tccgggaaat cctggaggag cggggagtgg 180 acatgaccag gctcagtgct gaatggggcg tattcacaaa gaggccttcc ttgaccaatc 240 ttacctcccc cgtggtcctc accaactacc tgaataccca gtactacggc gagattggca 300 tcggtacccc accccagacc ttcaaagtca tctttgacac gggttcagcc aacctctggg 360 tgccctccac caagtgcagc cgcctctacc ttgcttgtgg gattcacagc ctctatgagt 420 cctctgactc ctccagctac atggagaacg ggtccgactt caccatccac tacggatcag 480 ggagagtcaa aggtttcctc agccaggact cggtgactgt gggtggaatc actgtgacac 540 agacctttgg agaggtcacc gagctgcccc tgatcccttt catgctggcc aagtttgacg 600 gtgttctagg catgggcttt cccgctcagg ccgttggcgg ggttacccct gtctttgacc 660 acattctctc ccagggggtg ctaaaggagg aagtgttctc tgtctactac aacaggggtt 720 cccacctgct ggggggcgag gtggtgctag gaggtagcga cccgcagcat tatcaaggca 780 attttcacta tgtgagcatc agcaagactg actcctggca gatcacgatg aagggggtgt 840 ctgtggggtc ttccaccctg ctatgtgaag aaggctgtgc ggtagtggtg gacactggtt 900 catcctttat ctcggctcct acgagctccc tgaagttgat catgcaagcc ctgggagcca 960 aggagaagag aatagaagaa tatgttgtga actgtagcca ggtgcccacc ctccccgaca 1020 tttcctttga cctgggaggc agggcctaca cactcagcag tacggactac gtgctacagt 1080 atcccaacag gagagacaag ctgtgcacac tggctctcca tgccatggac atcccaccac 1140 ccactgggcc tgtctgggtc ctgggtgcca ccttcatccg caagttctat acagagtttg 1200 atcggcataa caatcgcatt ggattcgcct tggcccgcta aggccctctg ccacccagta 1260 accctaggcc aagccaagct ggcagtcctg ggggccattt tgtctggctt tgtccccaac 1320 atagggacac tggacacaga gaccctaacg agtgtttgcc ccttcacctg cactcaccct 1380 tccctgcttt aaggaaaaat cgaataaaga tttcatgtc 1419 //