Dbfetch
ID AK051111; SV 1; linear; mRNA; HTC; MUS; 2115 BP. XX AC AK051111; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched DE library, clone:D030073H22 product:adenylosuccinate lyase, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2115 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 5b7072e6ddb2d13b7eac2487beed1c11. DR Ensembl-Gn; ENSMUSG00000022407; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022104; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022065; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022040; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022071; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0021842; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0022514; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0021363; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0021807; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0021936; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0021914; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022004; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0021934; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0022528; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021105; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0021415; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023043; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0041807; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0041771; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0041735; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0041767; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0041501; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0042250; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0041576; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0041407; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0041566; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0041536; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0041629; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0041509; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0042284; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0041158; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0040896; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=D030073H22 XX FH Key Location/Qualifiers FH FT source 1..2115 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="9 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D030073H22" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 31..1485 FT /codon_start=1 FT /transl_table=1 FT /note="adenylosuccinate lyase (MGD|MGI:103202 GB|NM_009634, FT evidence: BLASTN, 99%, match=1869)" FT /note="putative" FT /db_xref="GOA:P54822" FT /db_xref="InterPro:IPR000362" FT /db_xref="InterPro:IPR004769" FT /db_xref="InterPro:IPR008948" FT /db_xref="InterPro:IPR019468" FT /db_xref="InterPro:IPR020557" FT /db_xref="InterPro:IPR022761" FT /db_xref="InterPro:IPR024083" FT /db_xref="MGI:MGI:103202" FT /db_xref="UniProtKB/Swiss-Prot:P54822" FT /protein_id="BAC34529.1" FT /translation="MAASGDPGSAESYRSPLAARYASREMCFLFSDRYKFQTWRQLWLW FT LAEAEQTLGLPITDEQIQEMKSNLNNIDFQMAAEEEKRLRHDVMAHVHTFGHCCPKAAG FT IIHLGATSCYVGDNTDLIILRNAFDLLLPKLARVISRLADFAKDRADLPTLGFTHFQPA FT QLTTVGKRCCLWIQDLCMDLQNLKRVRDELRFRGVKGTTGTQASFLQLFEGDHQKVEQL FT DKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEP FT FEKQQIGSSAMPYKRNPMRSERCCSLARHLMALTMDPLQTASVQWFERTLDDSANRRIC FT LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC FT HEKIRVLSQQAAAVVKQEGGDNDLIERIRADAYFSPIHSQLEHLLDPSSFTGRAPQQVH FT RFLEEEVRPLLKPYGNEMAVKAELCL" XX SQ Sequence 2115 BP; 534 A; 532 C; 565 G; 484 T; 0 other; ggtccgccgc gtcctggtcg cgtgttgaaa atggctgcat ccggcgaccc tggcagtgct 60 gaaagttacc gttctccgct ggcggcccgc tacgccagcc gcgagatgtg tttcttgttc 120 agcgacaggt acaagttcca gacgtggcgg cagctgtggc tgtggctggc ggaggccgaa 180 cagacgctgg gtttgcctat cacagatgaa caaatccagg agatgaagtc gaacctgaac 240 aacattgact tccagatggc agctgaggaa gagaagcgcc tgcggcacga cgtgatggct 300 cacgtgcaca cgtttggcca ctgctgtccg aaagctgcgg gcattattca tctgggcgcc 360 acctcctgct atgtcggaga caatacggac ctgattattc tgagaaatgc atttgaccta 420 cttttgccaa agcttgctag agtgatctcg aggcttgccg actttgctaa ggatcgtgct 480 gatctgccca cgttaggttt cacacacttt cagcctgctc agctgaccac ggttgggaaa 540 cgatgctgcc tttggattca agatctctgc atggatctcc agaacttgaa gcgtgtccgg 600 gatgagctgc gcttccgagg agtaaagggc accactggca cgcaggccag cttcctgcag 660 ctcttcgagg gggatcacca gaaggtggag cagctggaca agatggtgac agaaaaggca 720 gggtttaaaa gagccttcat catcacagga cagacgtaca cacggaaagt ggacatcgaa 780 gtgctgtctg tgctggccag cttaggagca tcggtgcaca agatttgcac tgacatacgc 840 ctgctggcaa acctgaagga gatggaggag ccctttgaga aacagcagat tggctccagt 900 gcgatgccgt acaagcggaa ccccatgcgc tccgaacgtt gctgcagcct ggcccgtcac 960 ctgatggccc ttaccatgga cccactacag acagcgtctg tgcagtggtt tgaacgtact 1020 ctggatgaca gtgccaaccg acggatctgt ttggctgaag cgtttctcac tgcagatact 1080 atattaaaca ccctacagaa catttctgaa ggattggtgg tgtaccccaa agtaattgaa 1140 cggcgcattc ggcaagagct gcctttcatg gccacagaga acatcatcat ggcaatggtg 1200 aaagccgggg gcagccgaca ggactgccat gagaaaatta gagtgctttc ccagcaggca 1260 gctgctgtgg tcaagcagga aggaggtgac aatgacctta tagagcgcat ccgggcagat 1320 gcctacttca gccccatcca ctcacagctg gagcacttgc tggacccctc ttctttcact 1380 ggccgagcac cccagcaggt ccacagattc ctggaagagg aagtgcgccc cctgctaaag 1440 ccctatggga atgagatggc ggtgaaagca gagctgtgtc tgtagagtag gagagctgag 1500 gagaacccgg ttacagtgat tagagcttgc tgattacagt gttagagtta ctactgtgtt 1560 tcttgggggg cactcctttg cacactcagg aggcagaggc aggcagatct ctgagttcaa 1620 gggccagcct ggtctacaaa acaagttcca ggacagccag agctacacag agaaaccctg 1680 tctcaacaaa caaacaaaca gaggctgggg acatggcact gactgctctt ccaaaggtcc 1740 tgagttcaaa tcccagcaac cacatggtgg ctcacaacca tctgtaatga gatctgatgc 1800 cctcttctgg tgcatgaaga cagctacagt gtattcatat acataaaata aatgaatctt 1860 taaaaacaaa caaaaagaat gtacattaag ttctcttgct tggggttcac aacagatagc 1920 cgtgctttct tgttttctcc agtcttttgt tgttgagaca gagtctcaat gtgtatcatt 1980 ggctgacctg gaacacagaa atctgcctca tctccccagt ggcaggatta aaggtgtgct 2040 ccaccatgcc tggctgtttt atatttttta cagcaacata atcttgcaga ataatgtagc 2100 tcatacttat tttcc 2115 //