Dbfetch
ID AK048744; SV 1; linear; mRNA; HTC; MUS; 2828 BP. XX AC AK048744; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched DE library, clone:C230036L07 product:lipoic acid synthetase, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2828 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c719ed69211b7722599c2fd999c8d0f7. DR Ensembl-Gn; ENSMUSG00000029199; mus_musculus. DR Ensembl-Gn; MGP_CASTEiJ_G0028685; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0029246; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029392; mus_musculus_dba2j. DR Ensembl-Gn; MGP_PWKPhJ_G0028409; mus_musculus_pwkphj. DR Ensembl-Tr; ENSMUST00000122026; mus_musculus. DR Ensembl-Tr; MGP_CASTEiJ_T0072019; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0071426; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0071564; mus_musculus_dba2j. DR Ensembl-Tr; MGP_PWKPhJ_T0071490; mus_musculus_pwkphj. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=C230036L07 XX FH Key Location/Qualifiers FH FT source 1..2828 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="0 day neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="C230036L07" FT /tissue_type="cerebellum" FT /db_xref="taxon:10090" FT CDS 77..1198 FT /codon_start=1 FT /transl_table=1 FT /note="lipoic acid synthetase (MGD|MGI:1934604 FT GB|NM_024471, evidence: BLASTN, 100%, match=1355)" FT /note="putative" FT /db_xref="GOA:Q99M04" FT /db_xref="InterPro:IPR003698" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR031691" FT /db_xref="MGI:MGI:1934604" FT /db_xref="UniProtKB/Swiss-Prot:Q99M04" FT /protein_id="BAC33443.1" FT /translation="MALRCWDTARSLGSRIFGRYAFTVRALSSLPDKKKEFLHNGPDLQ FT DFVSGDLADKSTWDEYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTV FT CEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTA FT KAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAV FT EKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQPDVVSKTSIMLGL FT GETDEQVYATLKALRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVGNELGFL FT YTASGPLVRSSYKAGEFFLKNLVARRKTKASKV" XX SQ Sequence 2828 BP; 740 A; 629 C; 702 G; 757 T; 0 other; gagttgttgg acacgtccgg tgccgggggt gctgttccct cgatcccttg acactcctga 60 gacctaaaag agggggatgg ctctacgctg ctgggataca gctcgcagcc tggggtcccg 120 gatatttgga agatatgcgt tcacggttag agcattaagt tctttgccag ataagaaaaa 180 ggaatttttg cataatggac cagaccttca agattttgta tctggtgatc ttgcagacaa 240 gagtacatgg gatgaatata aaggaaactt aaagcgccag aaaggagaaa ggctaagact 300 acctccatgg ctaaagacaa agatacccat gggtaaaaac tacaataaac tgaaaaatac 360 attgcggaat ttaagtctcc acacagtgtg tgaggaagcc cggtgcccca acattggaga 420 gtgttgggga ggtggggaat atgccacagc cacagccacg atcatgttga tgggggacac 480 atgcacaaga ggttgcagat tttgttccgt taagaccgca agaaatcccc ctccattgga 540 tgccaatgag cccgacaata cggccaaagc aattgcagag tggggtctgg attatgttgt 600 cctgacgtcg gtggatcgag atgatgtggc cgacggggga gctgagcaca tcgccaagac 660 cgtgtcatgc ttgaaggaaa ggaatccaaa aatcctcgtg gaatgcctca ccccagactt 720 ccgaggtgat ctgagagcag tggagaaggt ggctctgtct ggattagatg tgtatgcaca 780 caatgtggag actgtccccg agttacagag gaaagttcgt gatccccggg ccaattttga 840 ccagtctctt cgtgtactga gacatgccaa ggaggtccag cctgatgttg tttccaaaac 900 atcgataatg ctgggccttg gtgagacaga cgagcaagtc tatgccacac tgaaagctct 960 ccgtgcggcc gacgtggact gtttaactct agggcagtac atgcagccaa cgaagcgcca 1020 ccttaaggtt gaagaatatg ttactcctga gaagttcaaa tactgggaaa aagtagggaa 1080 tgaacttgga tttctctata cggcaagtgg tcctttggtg cgatcttcat ataaagcagg 1140 tgaatttttc ctgaaaaatc tagtggctag aagaaaaaca aaagcttcta aagtgtagcc 1200 aagcccttca agatcacagg agtgttgcga ttttgcttcc agttggtgtg aggatggtgt 1260 caccctgtca ggattcctgt gagtgcaagg cagcaccgtt ctgaagggtc tgatggctga 1320 tcgaagcgga atggtgtata cctgtaattc cacccaggaa aaaaaaaagg aaaagaaaaa 1380 gagaaaagaa gaaagaaaag aagcctataa ccctgtaaac gacacacatt tagtgataat 1440 tcatggactt cttgctggcc tttgtcctca tccttgtcag tgatgacttg atcacagaac 1500 agcttggaac ggcttgctgt tgccattgta attcaagtct atgaacattt agaagatctt 1560 ataaattaca gtaacccatg tgaaatttct tttcttaaaa agatttattt ttatttgcgt 1620 gtgtgtatgt gtgtgtgtgt gtgtgtgtta gtgtgttaga ggaacacatg cgcacacaca 1680 catatggact ccgtgacaca taataatctt tgtaagtcag ccccagtgtg gagttgggaa 1740 ggctcacgag ctcccaataa tgtcagtagc tgaggagggg aggcggtctt ctttaagggt 1800 gtggcctttg tgtgacccat gctctagagc agtggctctc agcctttctc acgctgaggc 1860 cctttaatac ggttcctaaa gtatggtgac cccagccatc aaattagctt tgttgctact 1920 tcattaccgt gattttgcta ctgttcatga gttgtaagtg tgtgataccc agggtattgt 1980 gacccttacc ctcccgctag ggtcgagcct ttgtggtcct tatggacact tcctcttgta 2040 gtcattacat acccatgcac tctgctgtcc acaaatgtcg taaagcctct gggccactgc 2100 tggctccttc ctactcttgt tttattgaat tacacagccc ctactggtac ctcttgctac 2160 tcttaattat agtgggttcc ttacaaaaag aacatacctg tgtgcacagg ataagacatg 2220 atggtacaca ctttgaacct cagcagttgt gtggaagatt gcagtgagtt gaaggccagc 2280 ctgggtcaaa gccctttatt atctgtcctt ccaaactgga tgtggacttt ttgttgtttg 2340 ttgagacagg gtctcatgca gcccaggcta ctcagactgg ctgtgtggta gaggatgacc 2400 cctgatgtcc tggctctgtc cctaagtgct gtgatcacag gcctgcaaca ctagctggca 2460 aggagtacac tctcacacca gtacttggag gcaatggaga agatcacagt attccaggcc 2520 agtctagact gtgcagcaaa gtcacccaaa gtcaccttcc ttacctgcct caagcaatct 2580 tctgttcctc atgttcctcc tgaactccag accaaaccca gcctttattt tcctgtctgt 2640 tgtgtgggct atgagacagg gtctcacagt gtagcaaagg ttatcacaga actcagttct 2700 gtagtcaggg ctgtcctgga actcctggca tctgcctgct ctgcctcaca ttacagggag 2760 aaagccactc cactctgcct cctgcctctt tttgttgttg ctaaatttta aaataagatc 2820 tacttttt 2828 //