Dbfetch
ID AK048122; SV 1; linear; mRNA; HTC; MUS; 3117 BP. XX AC AK048122; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 13) XX DE Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, DE clone:C130036A21 product:SPROUTY HOMOLOG 4 (SPRY-4) homolog [Mus musculus], DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3117 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 7820bd6fefb98fd731cdad3bd60f8c36. DR Ensembl-Gn; ENSMUSG00000024427; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0024365; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0024332; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0024301; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0024332; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0024098; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0024774; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0023573; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0024068; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0024198; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0024164; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0024282; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0024195; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0024823; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0023317; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0023636; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000025295; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0049523; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0049505; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0049466; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0049467; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0049199; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0049949; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0049301; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0049129; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0049226; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0049201; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0049350; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0049202; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0050064; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0048899; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0048492; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=C130036A21 XX FH Key Location/Qualifiers FH FT source 1..3117 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="16 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="C130036A21" FT /tissue_type="head" FT /db_xref="taxon:10090" FT CDS 225..1127 FT /codon_start=1 FT /transl_table=1 FT /note="SPROUTY HOMOLOG 4 (SPRY-4) homolog [Mus musculus] FT (SWISSPROT|Q9WTP2, evidence: FASTY, 100%ID, 100%length, FT match=900)" FT /note="putative" FT /db_xref="GOA:Q9WTP2" FT /db_xref="InterPro:IPR007875" FT /db_xref="InterPro:IPR030790" FT /db_xref="MGI:MGI:1345144" FT /db_xref="UniProtKB/Swiss-Prot:Q9WTP2" FT /protein_id="BAC33249.1" FT /translation="MEPPVPQSSVPVNPSSVMVQPLLDSRAPHSRLQHPLTILPIDQMK FT TSHVENDYIDNPSLAPATGPKRPRGGPPELAPTPARCDQDITHHWISFSGRPSSVSSSS FT STSSDQRLLDHMAPPPVAEQASPRAVRLQPKVVHCKPLDLKGPTAPPELDKHFLLCEAC FT GKCKCKECASPRTLPSCWVCNQECLCSAQTLVNYGTCMCLVQGIFYHCTNEDDEGSCAD FT HPCSCSGSNCCARWSFMGALSVVLPCLLCYLPATGCVKLAQRGYDRLRRPGCRCKHTNS FT VICKAASGDTKTSRSDKPF" XX SQ Sequence 3117 BP; 690 A; 848 C; 798 G; 781 T; 0 other; gaacatcgcc gctgaggcag cgaacagagc tgacagcgcg gagctggcgc tgcagggctc 60 agggagcttt gccggctcct ccgactgacg tctgcgactt caacggcgac tgacccactc 120 gggttcgggg atttacacag acgtggagcg atgcttgtga ctctgcagct cctcaaagac 180 ccctagaagc ctgtcccttg gtgcagttca ggacctccag cctcatggag cccccggttc 240 cacagagcag cgtccctgtg aatcccagct cagtcatggt gcagcccctc cttgacagca 300 gagcgcccca cagccggctc cagcacccac tcaccatctt acccattgac cagatgaaga 360 ccagccacgt ggagaatgac tacatagaca accctagcct ggcccctgcc acgggtccca 420 agcggccccg gggcgggcca ccagagctgg ctcctacacc tgcccgctgt gaccaggata 480 ttactcacca ctggatctcc ttcagcggtc ggcccagctc tgtaagcagc agtagcagca 540 cttcctccga ccagaggctc ctagatcaca tggctccacc gcccgtggct gagcaggcct 600 cacccagggc tgtgcgcctc cagcccaagg tggttcactg taagccgctg gacctcaaag 660 gcccgacagc tccgccagag ctagacaagc acttcttgct gtgtgaggcc tgtggaaagt 720 gtaagtgcaa agagtgtgcg tcccctcgga cgttaccttc ctgctgggtc tgcaaccagg 780 agtgcctgtg ctcggctcag acgctggtca actatggcac atgcatgtgt ctggtgcaag 840 gtatcttcta tcactgtact aatgaggatg atgagggctc ttgcgccgac cacccctgct 900 cctgttccgg ctccaactgc tgcgcccgct ggtccttcat gggcgccctc tctgtggtgc 960 tgccctgtct gctgtgctac ctgccggcca caggctgcgt caagctggcc cagcgaggct 1020 acgaccgcct gagacgcccc ggttgccgct gcaagcacac gaacagcgtc atctgcaagg 1080 cagccagtgg ggacaccaag accagcaggt ctgacaagcc tttctgacac tttggatgaa 1140 aaaaacatgg tccctcctgc cagtctcctg agactgacct tgctcatctg tcctctccta 1200 aaaccctaga ttgggaagaa accggcagag aacactactg cctagccttg agtccccaaa 1260 aggatgaaga tgtactttgg ggattttcac agtcttgaaa ctttgttaaa cagcagtgac 1320 agtgttaggg tatggtggta gggggcccag ttttcctatt tcagaagacg gaagacagat 1380 gcggacacag ggtctgcaag ttcagccact caatggcctt cccagcccct ctgcttcctc 1440 tcattttgcc attctctctg gctcctgctg gagccttcta cctgggagga acagctaatg 1500 ggaggcaaga tacctcgagg aagaccctcc gagccttgac ttctatcttt gccgcctccg 1560 tccatgcctg ttggccttgg cctcttggga aggtgcaccg tagccattcc tgctgtatgc 1620 acttgatgtc cgagaacaaa atcgccggta agctgctgcc tcccgtgagt agcaggatgg 1680 agaaggaacc acctggcagt gtgttcctcc tagctttcaa tcactaactt gggggttgtc 1740 cgctcatcac gccatcctcc agttcacaga ctggcctgcc tgctatgcgt cctgagcact 1800 ctttctactc ggattctttg tagaaactcg ctgggttaag aaggccagga tgacacaagc 1860 aagaccaaat atcattttgc caatgagtct gaggctgtgg tctctggatc cagccatgat 1920 gtttttatat gtttaattaa actagatgct attggtgttt aaacaataat aatacaacaa 1980 ccttgcttcc ttttgggcca cccccaggaa gggctgattt caaaatctgg gggtaagcaa 2040 cctcaaggag cgtttcccct gcacatcgag aatggcaaag aagaggccgt acctcccatt 2100 ggcaggatga cagttgagcc gaactggggt tgggttttct tgtgattctg ctgcttgctg 2160 tctctagcct tttgtgtata gtgatgcgtc tgtctttatg taaatagaga tgacagagtc 2220 tattttagtg ttaagaagcc ctggtgggga agtcggaaga tgccagagaa ggtggggaac 2280 gatcctccag gggctgctgg gtttgagccc cactttttgt gtgcacacac acagacaccc 2340 ctcccaacag cccccaaaga cgtagcaact ctttctctca cggtgctaaa ggactcagaa 2400 cgcgcagccc gtccagtggg taggtacttg ttgcatgcaa aaagctatcg tgtctctggt 2460 ccttgccccc agctgttgtg tgggtgggtt ttttttgttt tttttgtttt tttttttgtt 2520 gttgtttttg gttttggttt tttctttgtg tggtattttg tccccatccc tgcctctgat 2580 tcaagaaata gcctgggtca gaagaggtac cccaggtaaa attgagagag cattaggcaa 2640 aaatcatgtg gagcatttct ggttcttttg tgtgagcagc ccctagggag gaggcaagga 2700 gtcaggtagc tgtaagtgga gtgtacctat tgctcttttc tcaaggattc acccccaccc 2760 ccaccttgga agctactagt agtaatagta acaccttatg atttagaata agttaattgt 2820 aaccataggt atttattgat tggaggaagg gagggtttta ttttcagctt tatttatgca 2880 acatttactg gcttgtaaaa ggcaagtata aaatcctgca tcttcatcgt ctataactaa 2940 tccatacata tacctgccct tgccacattg cagtgttctt gcacagaacg gaaggaaaga 3000 tagaagacaa acccctgcga tcagcaaacc acttacacta attgaatgta ttagaagctt 3060 tctgaagggg ctggagatgt tttcctcgaa tgaggggtgt ggagggaccc ccccccc 3117 //