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EBI Dbfetch

ID   AK044508; SV 1; linear; mRNA; HTC; MUS; 3037 BP.
XX
AC   AK044508;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 13)
XX
DE   Mus musculus adult retina cDNA, RIKEN full-length enriched library,
DE   clone:A930017K23 product:G PROTEIN-COUPLED RECEPTOR 37, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3037
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 6df5601cd4379226556a844c708ae80d.
DR   Ensembl-Gn; ENSMUSG00000039904; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000054867; mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=A930017K23
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FH   Key             Location/Qualifiers
FH
FT   source          1..3037
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="A930017K23"
FT                   /tissue_type="retina"
FT                   /db_xref="taxon:10090"
FT   CDS             698..2020
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="G PROTEIN-COUPLED RECEPTOR 37 (SPTR|Q9QY42,
FT                   evidence: FASTY, 99.3%ID, 70%length, match=1260)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q9QY42"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR003909"
FT                   /db_xref="InterPro:IPR017452"
FT                   /db_xref="MGI:MGI:1313297"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9QY42"
FT                   /protein_id="BAC31956.1"
FT                   /translation="MPARGAPLSRTSRLLLLLLFKVSVSAALSFVPEPRNGTCLGESCS
FT                   PLIQRRSRDARGPGNSAKDALRVHVPREKLEAEVRGATSWDLPPPRGGDTGVIEEAAAA
FT                   GPLGPPTKPPSAWRWKSAQGKEPSGHLRRRDPTDPQLFFPTSEGGEMSSKRDGIPQSRQ
FT                   EHSVKTEPRDLFYWPRRTGQLQDSQHRPSAVHEGRTLAPPGRALPQNGSADDWVPDQGG
FT                   PRRGNTTRRVRLKNPFYPLTQESYGAYAVMCLSVVIFGTGIIGNLAVMCIVCHNYYMRS
FT                   ISNSLLANLAFWDFLIIFFCLPLVIFHELTKKWLLEDFSCKIVPYIEVASLGVTTFTLC
FT                   ALCIDRFRAATNVQMYYEMIENCSSTTAKLAVIWVGALLLALPEVVLRQLSKEDLGFSV
FT                   QAPAERCVIKISPDLPDTVQVERDCFIKIRTRNHWIRLSHL"
FT   polyA_signal    3008..3013
FT                   /note="putative"
FT   polyA_site      3037
FT                   /note="putative"
XX
SQ   Sequence 3037 BP; 727 A; 786 C; 699 G; 825 T; 0 other;
     gacttgtcaa ctttgaactg aaggagcagc aactttgaca gtggccgcgg gtttcgaatc        60
     tggcttctcc ttggcaacag tccctttgaa agtcgtcgga gttaaacgaa gcaagagttt       120
     cctctgtgct ccggtggtgc cttgtttgca agggtcccca ccccccaccc ccccgccagc       180
     cgagagtggg attgtgacag ccagtcccct agtggagcgg acttgttttt ctttttctct       240
     agagacctct actagcgact ggataaagca gtatggaaag gatgtaagta gcagagcaac       300
     tgttaccaag aagacagcca ccacccaaag gctgggagga gcgcggggct tcctccaggc       360
     tgcgcccagt cgcaacatta gggaacaatc aggtggtgtt cgcaactttt caaggtcagc       420
     ctcttggatc tgttatttcc ctgggaacct tcgggtgcac cgagcttgga ttagatttgg       480
     ctgggaaatg ctcagaacat gaaacgtgga aggattgtag ggatgtgttg atgacaccgt       540
     ccttccccaa gcgccctgtt ccctcccagc aatcttctgc tcccatcctc tacccagcgg       600
     tgagtatgtg acatgtgcct aactctctgc accaagtttg gcagcaggtg tcggtgctaa       660
     gctagagcca ggctagtagg tgcgccctcg ccgagccatg ccagcccggg gcgcgcctct       720
     ctcgcgcaca tcgcggctgc tgctccttct gctgtttaag gtttctgtct ctgctgccct       780
     gagctttgtc cctgagccca ggaatggaac ttgtctgggg gagagctgtt ccccactgat       840
     ccaacgccgc agcagggatg cccgtggacc tgggaattcg gcaaaagacg ctctgcgagt       900
     ccatgtgccc agagagaaac tggaagcaga ggtgagaggg gcgacctctt gggacctccc       960
     accacccagg ggcggtgaca caggtgtgat tgaagaagcg gcggctgctg ggcccttggg      1020
     acctccaacc aagccaccaa gtgcctggag atggaaaagt gcccagggta aagaaccatc      1080
     cgggcatttg aggagaaggg accccacgga tccccaactc ttctttccga catcggaggg      1140
     gggagagatg agttccaagc gcgatgggat tccccagagc aggcaggagc acagtgtgaa      1200
     aacggaaccc agagatcttt tttactggcc acgaagaact ggacaactcc aggattccca      1260
     acacaggcct tcagcagtac acgaaggaag gacccttgct cctccaggca gggcactacc      1320
     gcaaaacggg tctgcagatg actgggttcc tgaccaaggg ggtccacgcc gtggaaacac      1380
     cacgcggcgc gtgagattga agaacccctt ctacccattg acccaagaat cctacggagc      1440
     ctatgcggtc atgtgcttat ctgtggtgat ctttgggacc ggcattattg gcaacttggc      1500
     agtgatgtgc atcgtgtgtc acaattacta catgaggagc atctccaatt ctctcttggc      1560
     caacctggct ttctgggact ttctcatcat cttcttctgc ctccccctgg tcatcttcca      1620
     tgagttgact aagaagtggc ttttggaaga tttctcctgc aagatcgtgc cctatatcga      1680
     ggtggcttct ctgggtgtca ctaccttcac cttatgtgca ctgtgcatag atcgcttccg      1740
     ggctgccacc aacgtccaga tgtactatga aatgattgaa aattgctctt ccaccactgc      1800
     caaacttgcc gttatctggg ttggagctct gcttttggcc cttccggaag ttgtcctccg      1860
     ccagctgagc aaggaagatt tgggctttag tgtccaggct cctgcagaac ggtgtgtcat      1920
     aaagatctct cctgatttac cggacacagt ccaagtagag agagattgtt ttataaagat      1980
     tagaacaaga aatcactgga taagattgag tcacttgtga atgttctagc ttgactattg      2040
     caatgtgtgt acatacaaac tgctttgatt tggatttgac ttaaaggtct ctctcaaacc      2100
     ttcatggatt aaaagccggt cctaatgtgg tagtggtagg agttgaaaga ataatcagta      2160
     gctaatgccc agagaagaaa cacacacaca cacacacaca cacacacaca cacacacaca      2220
     cacaaaggaa atactgtcat gacttatgat gttcatggaa tgtcttgttt tccacaagct      2280
     caaagttgta atgaaaatga tgactgtatt cttaaaaaga aaaaacatat gatatattta      2340
     atgtcctcta ctttgagttt ttctgctcat atctttcatt tctctttcct ttcctttcct      2400
     ttcctttcct ttcctttcct ttcctttcct ttcctttcct ttcctttcct ttcctttcct      2460
     ttcctttcct tcccttccct tcccttccct tcccttccct tcccttccct tcccttccct      2520
     tcccttccct tccctttcct tttcttcctc ccacttctcc catgtgatgg ggcagcatgg      2580
     aagcctggct ggagagcagg cagatggatg agtgagactt ttacctccaa atctgtaacc      2640
     ttaacacacc tcttttcttt actttataag tactcagact ctaacactct attccaccaa      2700
     caagaaagct atacagaaga cttgtgtaaa gtcatggtga atattcactg aagccatcta      2760
     ataagagtac tgttgttata gataaatatc agaactctac agcaggaaga catttgaaaa      2820
     cattggtgtg ggaatgtttg aacaggaaaa atcagagagc tgtaacatgt cattgaacga      2880
     aaatgtaggc attgaaacta aaattaactt tttcttttat gtttgccttt tgatgttcag      2940
     tagttgatgc atagaccttt attaaatcct acccttgcca cttcattgtt aagacctggg      3000
     tgacccaaat aaaatctgat ttgtttgttt tctcatt                               3037
//


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