ID AK044096; SV 1; linear; mRNA; HTC; MUS; 900 BP.
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AC AK044096;
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DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 14)
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DE Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
DE library, clone:A830089I06 product:regulator of G-protein signaling 5, full
DE insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-900
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
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RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
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RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
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RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
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RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
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RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
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RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
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RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR MD5; 94a0013e438ec826ad27b5ad7302906d.
DR Ensembl-Gn; ENSMUSG00000026678; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0016720; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0016700; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0016666; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0016661; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0016485; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0017122; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0016065; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0016460; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0016566; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0016564; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0016637; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0016589; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0017159; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0015851; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0016127; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000027997; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0023299; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0023272; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0023239; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0023247; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0023049; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0023755; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0022596; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0022997; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0023114; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0023129; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0023218; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0023094; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0023793; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0022317; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0022613; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=A830089I06
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FH Key Location/Qualifiers
FH
FT source 1..900
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /dev_stage="10 days neonate"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="A830089I06"
FT /tissue_type="cortex"
FT /db_xref="taxon:10090"
FT CDS 79..624
FT /codon_start=1
FT /transl_table=1
FT /note="putative"
FT /note="regulator of G-protein signaling 5 (MGD|MGI:1098434
FT GB|NM_009063, evidence: BLASTN, 99%, match=793)"
FT /db_xref="GOA:O08850"
FT /db_xref="InterPro:IPR016137"
FT /db_xref="InterPro:IPR024066"
FT /db_xref="InterPro:IPR034955"
FT /db_xref="InterPro:IPR034956"
FT /db_xref="InterPro:IPR036305"
FT /db_xref="MGI:MGI:1098434"
FT /db_xref="UniProtKB/Swiss-Prot:O08850"
FT /protein_id="BAC31773.1"
FT /translation="MCKGLAALPHSCLERAKEIKIKLGILLQKPDSAVDLVIPYNEKPE
FT KPAKAHKPSLEEVLQWRQSLDKLLQNSYGFASFKSFLKSEFSEENLEFWVACENYKKIK
FT SPIKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSPRSFDLAQKRIYALME
FT KDSLPRFVRSEFYKELIK"
FT regulatory 882..887
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 900
FT /note="putative"
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SQ Sequence 900 BP; 237 A; 214 C; 205 G; 244 T; 0 other;
gagattattg aagtttccac agacggtcag ctgttgagag gttcgtgctc aagttgagga 60
tctaagccgc cagccaaaat gtgtaaggga ctggcagctc tgccgcactc atgcctggaa 120
agggccaagg agatcaagat caagttggga attctcctcc agaagccaga ctctgctgtt 180
gaccttgtca ttccatacaa tgagaagcca gagaagcctg ccaaggcaca caagccctca 240
ctggaggagg tcctgcagtg gcgccagtcc ctggacaagc ttctccagaa cagctatgga 300
tttgccagct tcaaaagttt cctgaagtct gaattcagtg aggaaaacct tgagttctgg 360
gttgcctgtg agaattacaa gaagatcaag tcccccatca aaatggcgga gaaggcaaag 420
caaatttatg aagaattcat ccagacagag gcccctaaag aggtgaacat tgaccacttc 480
actaaagaca tcaccatgaa gaacctggtg gaaccgtctc ctcgcagctt tgacttggcc 540
cagaaaagga tctatgccct gatggagaag gattctctgc cccgctttgt gcgctctgaa 600
ttttataagg agctaatcaa gtagtcatct ggtcaggctt ccaaaagttg ccctgtgagt 660
tgagttacat cctttgtagc aacacagcat cctcccaggc acctgcacag ttctccatag 720
cagctttgct ccaagataca caaacatagg caaaccacag gctgtgttgc taactctttc 780
gctcatgtta gtttggttat gtggatctgt tgtctaagag ccctcacttt tttctttttc 840
tttttttttt tctttttttt ggttctttct gactgctttg taataaagat ttaccaagtc 900
//