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EBI Dbfetch

ID   AK042430; SV 1; linear; mRNA; HTC; MUS; 1472 BP.
XX
AC   AK042430;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 13)
XX
DE   Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
DE   library, clone:A630091E18 product:CHEMOKINE RECEPTOR CCR11 homolog [Mus
DE   musculus], full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1472
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 10b0b482cdd203bf69d2dbb555180057.
DR   Ensembl-Gn; ENSMUSG00000079355; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000076147; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=A630091E18
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1472
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="3 days neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="A630091E18"
FT                   /tissue_type="thymus"
FT                   /db_xref="taxon:10090"
FT   CDS             172..1224
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="CHEMOKINE RECEPTOR CCR11 homolog [Mus musculus]
FT                   (SPTR|Q924I3, evidence: FASTY, 100%ID, 100%length,
FT                   match=1050)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q924I3"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR000355"
FT                   /db_xref="InterPro:IPR005383"
FT                   /db_xref="InterPro:IPR017452"
FT                   /db_xref="MGI:MGI:2181676"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q924I3"
FT                   /protein_id="BAC31258.1"
FT                   /translation="MALELNQSAEYYYEENEMNYTHDYSQYEVICIKEEVRQFAKVFLP
FT                   AFFTVAFVTGLAGNSVVVAIYAYYKKQRTKTDVYILNLAVADLLLLITLPFWAVNAVHG
FT                   WILGKMMCKVTSALYTVNFVSGMQFLACISIDRYWAITKAPSQSGAGRPCWIICCCVWM
FT                   AAILLSIPQLVFYTVNQNARCTPIFPHHLGTSLKASIQMLEIGIGFVVPFLIMGVCYAS
FT                   TARALIKMPNIKKSRPLRVLLAVVVVFIVTQLPYNVVKFCQAIDAIYLLITSCDMSKRM
FT                   DVAIQVTESIALFHSCLNPILYVFMGASFKNYIMKVAKKYGSWRRQRQNVEEIPFDSEG
FT                   PTEPTSSFTI"
XX
SQ   Sequence 1472 BP; 400 A; 372 C; 347 G; 353 T; 0 other;
     gacagagcac ttaatcaagg gctccggagg ctacgtttca ggaaagctct cttggatcca        60
     agataaaggc ggggtgtaaa atagaaaaca agagttgcct gactcagaga ggtcctctga       120
     tttcctctgc gctccagacg gcacctctcc cagcttaaac agctcggtac catggctctg       180
     gagctgaacc agtcagcgga atactattat gaggagaatg agatgaacta cactcacgac       240
     tacagccagt acgaagtgat ctgcataaaa gaagaggtca ggcagttcgc aaaagtcttc       300
     ctgcctgcct tcttcacagt ggcctttgtc actgggctcg cagggaactc cgtagttgtg       360
     gcgatttacg cctattacaa gaagcagagg accaagaccg atgtgtacat cctgaacctg       420
     gctgtagcag acttgttact tctgatcacg ctgcctttct gggcagttaa tgcagttcac       480
     ggatggattc taggcaaaat gatgtgcaaa gtaacgtcag ccctgtacac ggtaaacttt       540
     gtctctggga tgcagttcct ggcttgtatc agcattgaca gatattgggc aattaccaaa       600
     gcccccagcc aatcaggagc ggggagaccc tgttggatca tctgttgctg tgtgtggatg       660
     gccgccatct tgctgagcat accccagctg gttttttaca cagtgaatca gaatgctagg       720
     tgcactccca tctttcccca ccacctagga acatccctga aagcatccat tcagatgctg       780
     gaaatcggca tcggctttgt ggtcccgttt ctcatcatgg gcgtgtgcta tgccagtacc       840
     gccagggcgc tcatcaagat gcccaacatt aaaaagtctc gccccctcag ggttctgctc       900
     gcggtggtgg tggttttcat tgtcacccag ctgccctata acgttgttaa gttctgccaa       960
     gccatagatg ccatctacct gctgatcacc agctgcgata tgagcaaacg catggatgtc      1020
     gccatccaag tcacagagag catcgcgctc ttccacagct gcctcaaccc catcctgtat      1080
     gtcttcatgg gggcctcctt caaaaactat atcatgaaag tggccaagaa atatggatcc      1140
     tggagaagac agagacagaa cgtggaagaa attccttttg attctgaggg tcctacagag      1200
     ccaaccagtt cttttaccat ttaaatataa aactgctctc tgcctctgct ttttgcttag      1260
     acacacacac acacacacac acacacacac acacacaggg tgatgtttcc tcctcaaata      1320
     aaatatttgt gttacaccga gacccaacca tcaacaaata ctgttgttgc aatttataac      1380
     aaagaaggag taaggggtgg ggcagggtaa ggaagacaga cgccagagag taaacaagtg      1440
     ggcaaagtgt ggaaactaaa tctaatgaca gg                                    1472
//


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