Dbfetch
ID AK042430; SV 1; linear; mRNA; HTC; MUS; 1472 BP. XX AC AK042430; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 13) XX DE Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched DE library, clone:A630091E18 product:CHEMOKINE RECEPTOR CCR11 homolog [Mus DE musculus], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1472 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 10b0b482cdd203bf69d2dbb555180057. DR Ensembl-Gn; ENSMUSG00000079355; mus_musculus. DR Ensembl-Tr; ENSMUST00000076147; mus_musculus. DR Ensembl-Tr; ENSMUST00000188000; mus_musculus. DR Ensembl-Tr; ENSMUST00000219146; mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=A630091E18 XX FH Key Location/Qualifiers FH FT source 1..1472 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="3 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="A630091E18" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 172..1224 FT /codon_start=1 FT /transl_table=1 FT /note="CHEMOKINE RECEPTOR CCR11 homolog [Mus musculus] FT (SPTR|Q924I3, evidence: FASTY, 100%ID, 100%length, FT match=1050)" FT /note="putative" FT /db_xref="GOA:Q924I3" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR000355" FT /db_xref="InterPro:IPR005383" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:2181676" FT /db_xref="UniProtKB/Swiss-Prot:Q924I3" FT /protein_id="BAC31258.1" FT /translation="MALELNQSAEYYYEENEMNYTHDYSQYEVICIKEEVRQFAKVFLP FT AFFTVAFVTGLAGNSVVVAIYAYYKKQRTKTDVYILNLAVADLLLLITLPFWAVNAVHG FT WILGKMMCKVTSALYTVNFVSGMQFLACISIDRYWAITKAPSQSGAGRPCWIICCCVWM FT AAILLSIPQLVFYTVNQNARCTPIFPHHLGTSLKASIQMLEIGIGFVVPFLIMGVCYAS FT TARALIKMPNIKKSRPLRVLLAVVVVFIVTQLPYNVVKFCQAIDAIYLLITSCDMSKRM FT DVAIQVTESIALFHSCLNPILYVFMGASFKNYIMKVAKKYGSWRRQRQNVEEIPFDSEG FT PTEPTSSFTI" XX SQ Sequence 1472 BP; 400 A; 372 C; 347 G; 353 T; 0 other; gacagagcac ttaatcaagg gctccggagg ctacgtttca ggaaagctct cttggatcca 60 agataaaggc ggggtgtaaa atagaaaaca agagttgcct gactcagaga ggtcctctga 120 tttcctctgc gctccagacg gcacctctcc cagcttaaac agctcggtac catggctctg 180 gagctgaacc agtcagcgga atactattat gaggagaatg agatgaacta cactcacgac 240 tacagccagt acgaagtgat ctgcataaaa gaagaggtca ggcagttcgc aaaagtcttc 300 ctgcctgcct tcttcacagt ggcctttgtc actgggctcg cagggaactc cgtagttgtg 360 gcgatttacg cctattacaa gaagcagagg accaagaccg atgtgtacat cctgaacctg 420 gctgtagcag acttgttact tctgatcacg ctgcctttct gggcagttaa tgcagttcac 480 ggatggattc taggcaaaat gatgtgcaaa gtaacgtcag ccctgtacac ggtaaacttt 540 gtctctggga tgcagttcct ggcttgtatc agcattgaca gatattgggc aattaccaaa 600 gcccccagcc aatcaggagc ggggagaccc tgttggatca tctgttgctg tgtgtggatg 660 gccgccatct tgctgagcat accccagctg gttttttaca cagtgaatca gaatgctagg 720 tgcactccca tctttcccca ccacctagga acatccctga aagcatccat tcagatgctg 780 gaaatcggca tcggctttgt ggtcccgttt ctcatcatgg gcgtgtgcta tgccagtacc 840 gccagggcgc tcatcaagat gcccaacatt aaaaagtctc gccccctcag ggttctgctc 900 gcggtggtgg tggttttcat tgtcacccag ctgccctata acgttgttaa gttctgccaa 960 gccatagatg ccatctacct gctgatcacc agctgcgata tgagcaaacg catggatgtc 1020 gccatccaag tcacagagag catcgcgctc ttccacagct gcctcaaccc catcctgtat 1080 gtcttcatgg gggcctcctt caaaaactat atcatgaaag tggccaagaa atatggatcc 1140 tggagaagac agagacagaa cgtggaagaa attccttttg attctgaggg tcctacagag 1200 ccaaccagtt cttttaccat ttaaatataa aactgctctc tgcctctgct ttttgcttag 1260 acacacacac acacacacac acacacacac acacacaggg tgatgtttcc tcctcaaata 1320 aaatatttgt gttacaccga gacccaacca tcaacaaata ctgttgttgc aatttataac 1380 aaagaaggag taaggggtgg ggcagggtaa ggaagacaga cgccagagag taaacaagtg 1440 ggcaaagtgt ggaaactaaa tctaatgaca gg 1472 //