Dbfetch

ID   AK039322; SV 1; linear; mRNA; HTC; MUS; 1586 BP.
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AC   AK039322;
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DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 15)
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DE   Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
DE   library, clone:A330022O10 product:NGCAM-RELATED RELATED CELL ADHESION
DE   MOLECULE (FRAGMENT) homolog [Homo sapiens], full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
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RN   [1]
RP   1-1586
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
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RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
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RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
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RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; d335bca430cce87ef3ce37b7c8ce0fda.
DR   Ensembl-Gn; ENSMUSG00000020598; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0019712; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0019676; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0019647; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0019654; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0019458; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0020101; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0019011; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0019430; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0019543; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0019532; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0019613; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0019568; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0020141; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0018778; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0019061; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000020939; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000110748; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0034773; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0034698; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0034682; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0034696; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0034476; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0035195; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0034398; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0034390; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0034533; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0034524; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0034672; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0034534; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0035243; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0034079; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0033940; mus_musculus_wsbeij.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=A330022O10
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FH   Key             Location/Qualifiers
FH
FT   source          1..1586
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="A330022O10"
FT                   /tissue_type="spinal cord"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..506
FT                   /codon_start=3
FT                   /transl_table=1
FT                   /note="NGCAM-RELATED RELATED CELL ADHESION MOLECULE
FT                   (FRAGMENT) homolog [Homo sapiens] (SPTR|Q9UHI4, evidence:
FT                   FASTY, 99.4%ID, 12.7%length, match=501)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="GOA:Q810U4"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003598"
FT                   /db_xref="InterPro:IPR003599"
FT                   /db_xref="InterPro:IPR003961"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR013098"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR026966"
FT                   /db_xref="InterPro:IPR036116"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="MGI:MGI:104750"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q810U4"
FT                   /protein_id="BAC30318.1"
FT                   /translation="SGFVSSEDVFETGPAMASRQVDIATQGWFIGLMCAVALLILILLI
FT                   VCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFGEYRSFESDAEDHKPLKKGSRTP
FT                   SDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSEAPSPVNAM
FT                   NSFV"
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SQ   Sequence 1586 BP; 438 A; 315 C; 375 G; 458 T; 0 other;
     actctggttt tgtgagttca gaggatgtgt ttgagacagg accagcaatg gcaagccggc        60
     aagtggatat cgcgacccaa ggctggttca taggtctaat gtgcgctgtt gctctcctca       120
     tcttaatttt gctgattgtt tgcttcatca gaagaaacaa aggtggtaaa tacccagtta       180
     aagaaaagga ggatgctcat gcagaccctg aaatccagcc catgaaggaa gatgatggga       240
     cgtttggaga atacaggtct tttgaaagtg atgcagaaga tcacaagcct ttgaaaaaag       300
     gaagtcgaac accttcagac aggactgtga aaaaagaaga tagcgatgat agtctggttg       360
     actatggaga gggggtgaac ggccaattca acgaggatgg ctcctttatt ggccaataca       420
     gtggtaagaa agagaaagag ccagcagagg gaaatgaaag ctcagaggcc ccttctcctg       480
     tcaacgcaat gaactccttt gtttaagtct ttaagctctg tgccaatgtc taatctctct       540
     ggaatggttt tcctgaacac ctgtcatccc tctcatacta cggacatatg ggtagaaaga       600
     atgttttctg cggtatatga gtattatgag accagagcaa gaacatgact cagtcaaatg       660
     atacattaat atgaactggg gtgcaaagtg catacgtttt tgttcagagt ggggtttttc       720
     tcaatttcct tggaactgat taaaaagaaa tacaacatca tcaatagatt acattattcc       780
     ctgtgcggga tccagttcaa tacgatgcat gagacatgct gcacagagga cacacctgtg       840
     tatgtgactg cgatgtggtt gggtactttg ttggcactat cctcagctga tccctaaata       900
     tgaattccgt tgtcattgtg aagagtgttg ctgtagtgtt ctctagagct tcaatgtctc       960
     tgtggacatt gttgttaaac tcgtgactat gtctagctgg tgttagtctt tttgagagac      1020
     tattaggaac agtgtgtaca gtatatactt gctacatgag ttacttatga cagttgcatc      1080
     cactaatgct cgctgagact ctgaaacctg ttctttgctc ccggaccttc ctaggctttt      1140
     tatccttccg ggtgtcacag cagcagagtc ccacttacta tactatctgc gttcagtcct      1200
     ttggggggca taaacattgc gtattgtgac acctgctggc atttgtgccc tactcaaaga      1260
     attgaagtca aagctctcaa gtgaaatttt aaattttagt tcagaaaatg cagggcaaga      1320
     cacacgcagt gccttcagac aattagcatt ccctgactcc tgtactctgt atcagccagt      1380
     gtgggcaact tcatcctacg ctactgttgt tggaaaggaa cttttccaag gcagagataa      1440
     ttcgaactga aactgggagc ataggaacaa ctttatttga agtggtgttc cccacacaaa      1500
     tatcaggcct ccaaagctct gtcattgtcg ggtgtacagg atggttttgt tgtcttttgt      1560
     ggtttctagc caaacaagtc aagttg                                           1586
//