ID AK039322; SV 1; linear; mRNA; HTC; MUS; 1586 BP.
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AC AK039322;
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DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 15)
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DE Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
DE library, clone:A330022O10 product:NGCAM-RELATED RELATED CELL ADHESION
DE MOLECULE (FRAGMENT) homolog [Homo sapiens], full insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-1586
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
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RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR MD5; d335bca430cce87ef3ce37b7c8ce0fda.
DR Ensembl-Gn; ENSMUSG00000020598; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0019712; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0019676; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0019647; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0019654; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0019458; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0020101; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0019011; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0019430; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0019543; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0019532; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0019613; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0019568; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0020141; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0018778; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0019061; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000020939; mus_musculus.
DR Ensembl-Tr; ENSMUST00000110748; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0034773; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0034698; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0034682; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0034696; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0034476; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0035195; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0034398; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0034390; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0034533; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0034524; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0034672; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0034534; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0035243; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0034079; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0033940; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=A330022O10
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FH Key Location/Qualifiers
FH
FT source 1..1586
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="male"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="A330022O10"
FT /tissue_type="spinal cord"
FT /db_xref="taxon:10090"
FT CDS <1..506
FT /codon_start=3
FT /transl_table=1
FT /note="NGCAM-RELATED RELATED CELL ADHESION MOLECULE
FT (FRAGMENT) homolog [Homo sapiens] (SPTR|Q9UHI4, evidence:
FT FASTY, 99.4%ID, 12.7%length, match=501)"
FT /note="putative"
FT /note="start codon is not identified"
FT /db_xref="GOA:Q810U4"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003598"
FT /db_xref="InterPro:IPR003599"
FT /db_xref="InterPro:IPR003961"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR013098"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR026966"
FT /db_xref="InterPro:IPR036116"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="MGI:MGI:104750"
FT /db_xref="UniProtKB/Swiss-Prot:Q810U4"
FT /protein_id="BAC30318.1"
FT /translation="SGFVSSEDVFETGPAMASRQVDIATQGWFIGLMCAVALLILILLI
FT VCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFGEYRSFESDAEDHKPLKKGSRTP
FT SDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSEAPSPVNAM
FT NSFV"
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SQ Sequence 1586 BP; 438 A; 315 C; 375 G; 458 T; 0 other;
actctggttt tgtgagttca gaggatgtgt ttgagacagg accagcaatg gcaagccggc 60
aagtggatat cgcgacccaa ggctggttca taggtctaat gtgcgctgtt gctctcctca 120
tcttaatttt gctgattgtt tgcttcatca gaagaaacaa aggtggtaaa tacccagtta 180
aagaaaagga ggatgctcat gcagaccctg aaatccagcc catgaaggaa gatgatggga 240
cgtttggaga atacaggtct tttgaaagtg atgcagaaga tcacaagcct ttgaaaaaag 300
gaagtcgaac accttcagac aggactgtga aaaaagaaga tagcgatgat agtctggttg 360
actatggaga gggggtgaac ggccaattca acgaggatgg ctcctttatt ggccaataca 420
gtggtaagaa agagaaagag ccagcagagg gaaatgaaag ctcagaggcc ccttctcctg 480
tcaacgcaat gaactccttt gtttaagtct ttaagctctg tgccaatgtc taatctctct 540
ggaatggttt tcctgaacac ctgtcatccc tctcatacta cggacatatg ggtagaaaga 600
atgttttctg cggtatatga gtattatgag accagagcaa gaacatgact cagtcaaatg 660
atacattaat atgaactggg gtgcaaagtg catacgtttt tgttcagagt ggggtttttc 720
tcaatttcct tggaactgat taaaaagaaa tacaacatca tcaatagatt acattattcc 780
ctgtgcggga tccagttcaa tacgatgcat gagacatgct gcacagagga cacacctgtg 840
tatgtgactg cgatgtggtt gggtactttg ttggcactat cctcagctga tccctaaata 900
tgaattccgt tgtcattgtg aagagtgttg ctgtagtgtt ctctagagct tcaatgtctc 960
tgtggacatt gttgttaaac tcgtgactat gtctagctgg tgttagtctt tttgagagac 1020
tattaggaac agtgtgtaca gtatatactt gctacatgag ttacttatga cagttgcatc 1080
cactaatgct cgctgagact ctgaaacctg ttctttgctc ccggaccttc ctaggctttt 1140
tatccttccg ggtgtcacag cagcagagtc ccacttacta tactatctgc gttcagtcct 1200
ttggggggca taaacattgc gtattgtgac acctgctggc atttgtgccc tactcaaaga 1260
attgaagtca aagctctcaa gtgaaatttt aaattttagt tcagaaaatg cagggcaaga 1320
cacacgcagt gccttcagac aattagcatt ccctgactcc tgtactctgt atcagccagt 1380
gtgggcaact tcatcctacg ctactgttgt tggaaaggaa cttttccaag gcagagataa 1440
ttcgaactga aactgggagc ataggaacaa ctttatttga agtggtgttc cccacacaaa 1500
tatcaggcct ccaaagctct gtcattgtcg ggtgtacagg atggttttgt tgtcttttgt 1560
ggtttctagc caaacaagtc aagttg 1586
//