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EBI Dbfetch

ID   AK038844; SV 1; linear; mRNA; HTC; MUS; 4286 BP.
XX
AC   AK038844;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 15)
XX
DE   Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
DE   library, clone:A230067N21 product:gamma-aminobutyric acid (GABA-B)
DE   receptor, 1, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4286
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 34b2eba1278f7ab17ac7738cda36e89e.
DR   Ensembl-Gn; ENSMUSG00000024462; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000025338; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000172792; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=A230067N21
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4286
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="A230067N21"
FT                   /tissue_type="hypothalamus"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..2247
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="gamma-aminobutyric acid (GABA-B) receptor, 1
FT                   (MGD|MGI:1860139 GB|NM_019439, evidence: BLASTN, 100%,
FT                   match=2073)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="GOA:Q8CAF8"
FT                   /db_xref="InterPro:IPR000337"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="InterPro:IPR002455"
FT                   /db_xref="InterPro:IPR002456"
FT                   /db_xref="InterPro:IPR017978"
FT                   /db_xref="InterPro:IPR028082"
FT                   /db_xref="MGI:MGI:1860139"
FT                   /db_xref="UniProtKB/TrEMBL:Q8CAF8"
FT                   /protein_id="BAC30149.1"
FT                   /translation="IHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAAR
FT                   MWNLIVLSYGSSSPALSNRQRFPTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTE
FT                   VFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFC
FT                   EVYKERLFGKKYVWFLIGWYADNWFKTYDPSINCTVEEMTEAVEGHITTEIVMLNPANT
FT                   RSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSGGGGRSGVR
FT                   LEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKKIGYY
FT                   DSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSF
FT                   NIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQFPFVCQARLWLLG
FT                   LGFSLGYGSMFTKIWWVHTVFTKKEEKKEWRKTLEPWKLYATVGLLVGMDILTLAIWQI
FT                   VDPLHRTIETFAKEEPKEDIDVSILPQLEHCSSKKMNTWLGIFYGYKGLLLLLGIFLAY
FT                   ETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYIT
FT                   LVVLFVPKMRRLITRGEWQSEAQDTMKTGSSTNNNEEEKSRLLEKENRELEKIIAEKEE
FT                   RVSELRHQLQSRQQIRSRRHPPTPPDPSGGLPRGPSEPPDRLSCDGSRVHLLYK"
XX
SQ   Sequence 4286 BP; 1002 A; 1072 C; 1067 G; 1145 T; 0 other;
     atccaccacg acagcaagtg cgacccaggg caagccacca agtacttgta tgaactactc        60
     tacaacgacc ccatcaagat catcctcatg cccggctgca gctctgtgtc cacactggta       120
     gccgaggctg cccggatgtg gaaccttatt gtgctctcat atggctccag ctcaccagcc       180
     ttgtcaaacc gacagcggtt tccaacgttc tttcggacac atccatccgc cacactccac       240
     aatcccaccc gggtgaaact cttcgaaaag tggggctgga agaagattgc caccatccag       300
     cagactaccg aggtcttcac ctcaacactg gatgacctgg aggagcgagt gaaagaggct       360
     gggattgaga tcacttttcg acagagtttc ttctcagatc cagctgtgcc tgttaaaaac       420
     ctgaagcgtc aagatgctcg aatcatcgtg ggacttttct atgagaccga agcccggaaa       480
     gttttttgtg aggtctataa ggaacggctc tttgggaaga agtatgtctg gtttctcatc       540
     gggtggtatg ctgacaactg gttcaaaacc tatgacccgt caatcaattg tacagtagaa       600
     gagatgactg aggcggtgga gggccatatc accacggaga ttgtcatgct gaaccctgcc       660
     aacacccgaa gcatttccaa catgacatca caggaatttg tggagaaact aaccaagcgg       720
     ctgaaaagac accctgagga gactggaggc ttccaggagg caccactggc ctatgatgct       780
     atctgggcct tggctttggc cttgaacaag acctctggag gaggtggccg ttcaggagtg       840
     cgcctggagg actttaacta caacaaccag accattacag accaaatcta ccgggccatg       900
     aactcctcct cctttgaggg tgtttctggc cacgtggtct ttgatgccag cggctcccgg       960
     atggcatgga cgcttatcga gcagctacag ggcggcagct acaagaagat cggctactac      1020
     gacagcacca aggatgatct ttcctggtcc aaaacagaca agtggatcgg agggtctccc      1080
     ccagccgacc agaccttggt catcaagaca ttccgtttcc tgtcacagaa actctttatc      1140
     tccgtctcag ttctctccag cctgggcatt gttcttgctg ttgtctgtct gtcctttaac      1200
     atctacaact cccacgttcg ttatatccag aactcccagc ccaacctgaa caatctgact      1260
     gctgtgggct gctcactggc actagctgct gtcttccccc ttgggctgga tggttaccac      1320
     atagggagaa gccagttccc atttgtctgc caggcccgcc tttggctctt gggcttaggc      1380
     tttagtctgg gctatggctc tatgttcacc aagatctggt gggtccacac agtcttcaca      1440
     aagaaggagg agaagaagga atggaggaag accctagagc cttggaaact gtacgccact      1500
     gtaggcctgc tggtgggcat ggatatcctg actcttgcca tctggcagat tgtggacccc      1560
     ttgcaccgaa ccattgagac ttttgccaag gaggaaccaa aggaagacat tgatgtctcc      1620
     attctgcccc agctggagca ctgcagctcc aagaagatga atacatggct cggcattttc      1680
     tatggttaca aagggctgct gctgctgctg ggaatctttc ttgcttatga gaccaaaagt      1740
     gtgtccactg aaaagatcaa tgaccacagg gccgtgggca tggctatcta caatgttgcg      1800
     gtcctgtgtc tcattaccgc tcctgtcacc atgatccttt ccagccagca ggacgcagcc      1860
     ttcgcctttg cctctctggc cattgtgttc tcttcctaca ttactctggt tgtgctcttt      1920
     gtgcctaaga tgcgcaggtt gatcactcga ggtgaatggc agtctgaagc acaggacaca      1980
     atgaaaacag gatcatccac caacaacaat gaggaagaga agtcccgact gttggagaag      2040
     gaaaaccgtg aattggaaaa gatcatcgcc gagaaagagg agcgtgtctc tgaactgcgc      2100
     catcagctcc agtctcggca gcagatccgc tcccggcgcc accccccaac acccccagac      2160
     ccctctgggg gccttcccag gggaccctca gagccccctg accggcttag ctgtgatggg      2220
     agtcgagtac atttgcttta caagtgaggg tgtatcgaga aggatgaggc cagcagggga      2280
     gggaagggtg tggggagtgg gtggggaact gggaagaggg tggagaacaa gctccaatcc      2340
     ccctcttaga aatacatgtc attctgtgca tctggggtta tctgggtctt cagtactctg      2400
     ggaaacagat ggttttcttt ctttccatat aattttatat caccacttca cagttttgtt      2460
     tgaaccctgc ttggagctat tcactcatga ctccagaggg gcatctcgtt tgtctcccat      2520
     aggctgtctt gtatagttgt tactacagca actcctgtca tttcagcagc aggggtcttc      2580
     ctacattatc agggctttct ctccatttct cagcattaga atctccttcc atcatccttc      2640
     tcctccatgt ccctgtgtct tcctctcctt aaatgttgct tcttccaggg gactcaccac      2700
     acacacacac acacacacac acacacacac acacacacac catatcctct cctctcctag      2760
     gcagctggat gtgtttctgt gcaaatatgt tcttttctga atgctgctat cacttgtgtt      2820
     tgcatatgct gcacctgtga gtgcacagtg gttgtgggtg tgtgcagtgg tgtgcttggg      2880
     taggcgtgca tgatgtgttg agcacaccaa gctgtcttcc tcatgtgcat atgtcatggt      2940
     tgtctatgtt ttacttgtgt gcctccttgc attgtgtatt ttttctttgc attttaatat      3000
     cactatgtag tgtgtgtgtg tgttgccctg actcgtgtca gggcaggctt cctgtctcag      3060
     ccttctgagt attgggatta cagttgtctg cctagctgat gtcctgtctt ctttcagcag      3120
     aggcatgtgc acccaacatg cacatgatta agcaggctct tccccagtac gtgttttctg      3180
     agccatgcat accctctcct tggccttagg tttactctca agtgttccct ctattctcat      3240
     gcgtcccact ttgggtctgt acaatcatct ctcagaacta ctgcatcttg gttttctttt      3300
     ctttgttgtc attattatta tttttcagaa ctaaggggaa aagaaatggg gacaggttgg      3360
     aggctgtttc cagtggatag tgggtgcaca tttgatcaaa tgaaggcatg gacagatgga      3420
     ctgaccgggc gggaggcagc atccctttca cactgtggtg tctcttgggg gaaggatctc      3480
     cctgaatctc aataaagcag ttaacagtgt gactcagcac ctcatccact gtcctgtgaa      3540
     ctgagtgggc tccaggaagc gagaagccca ggctctcaag attggagtta atgaaaaggc      3600
     tttgaagcag agaggtgcaa agagctgtgt gattgttcca tgcagggatt agtggggcag      3660
     agcgggatga gatgaagggc tcgattagtg agtgatggca ttagtggtta aaagtgtggg      3720
     ctctggagtc aggcctgcac cacacgcaga aatgttccct aatccctatt ctccactttt      3780
     atgatctgat gatagataac aataatgatg attcatttct ctgtggagtg cacacaagaa      3840
     ctaggctaat tatgcatccc aatgcctgga tctgcttggt ccatggtagt agcctctgtt      3900
     actgttgcct cctggattcc ccagcagtgg tgggcatgct ctgggagcct ggagtaggtg      3960
     gctgagcaga tgtgaagagt ctcctcctca tcagacagga agaatcacaa gcaaacaatg      4020
     agtgccaggt tctggaataa gcgcctcaga acttggaaac cgttctctaa ggaactctga      4080
     gcatcttggg aagaattttt gatcaagatg aatgtttgaa aagcctggag gagaaaactt      4140
     ggaatttttg taattcttta aggtggttct tcttccctct tgctgcatgg aagcttcaag      4200
     ggttggatgg gcctatcatt tcactgtcct gtttatggca ggttagatct taaacctcct      4260
     ttgaaaacaa cccatagtga ttatcc                                           4286
//


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