Dbfetch
ID AK036328; SV 1; linear; mRNA; HTC; MUS; 3890 BP.
XX
AC AK036328;
XX
DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 14)
XX
DE Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched
DE library, clone:9630058F14 product:PHOSPHATIDATE CYTIDYLYLTRANSFERASE 2 (EC
DE 2.7.7.41) (CDP-DIGLYCERIDE SYNTHETASE 2) (CDP-DIGLYCERIDE PYROPHOSPHORYLASE
DE 2) (CDP- DIACYLGLYCEROL SYNTHASE 2) (CDS 2) (CTP:PHOSPHATIDATE
DE CYTIDYLYLTRANSFERASE 2) (CDP-DAG SYNTHASE 2) (CDP-DG SYNTHETASE 2) homolog
DE [Homo sapiens], full insert sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3890
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 12c7492cd33b093a0c4e0a9a6b62db65.
DR Ensembl-Gn; ENSMUSG00000058793; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0026541; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0026505; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0026479; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0026517; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0026260; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0026962; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0025721; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0026240; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0026374; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0026338; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0026478; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0026358; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0027017; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0025457; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0025795; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000103181; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0057847; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0057878; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0057821; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0057816; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0057507; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0058292; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0057754; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0057479; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0057578; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0057555; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0057703; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0057525; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0058457; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0057333; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0056812; mus_musculus_wsbeij.
XX
CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=9630058F14
XX
FH Key Location/Qualifiers
FH
FT source 1..3890
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /dev_stage="16 days neonate"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="9630058F14"
FT /tissue_type="cerebellum"
FT /db_xref="taxon:10090"
FT CDS 148..1482
FT /codon_start=1
FT /transl_table=1
FT /note="PHOSPHATIDATE CYTIDYLYLTRANSFERASE 2 (EC 2.7.7.41)
FT (CDP-DIGLYCERIDE SYNTHETASE 2) (CDP-DIGLYCERIDE
FT PYROPHOSPHORYLASE 2) (CDP- DIACYLGLYCEROL SYNTHASE 2) (CDS
FT 2) (CTP:PHOSPHATIDATE CYTIDYLYLTRANSFERASE 2) (CDP-DAG
FT SYNTHASE 2) (CDP-DG SYNTHETASE 2) homolog [Homo sapiens]
FT (SWISSPROT|O95674, evidence: FASTY, 96.2%ID, 100%length,
FT match=1332)"
FT /note="putative"
FT /db_xref="GOA:Q99L43"
FT /db_xref="InterPro:IPR000374"
FT /db_xref="InterPro:IPR016720"
FT /db_xref="MGI:MGI:1332236"
FT /db_xref="UniProtKB/Swiss-Prot:Q99L43"
FT /protein_id="BAC29384.1"
FT /translation="MTELRQRVVREDAPPEDKESESEAKLDGETASDSESRAETAPLPT
FT SVDDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKC
FT FHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSK
FT YHRFISFALYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMI
FT WFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMS
FT GYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQSAIGWKTVRMYPFQIHSIA
FT LSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASF
FT IRGPNPSKLIQQFLTLRPDQQLHIFNTLKSHLTDKGILTSALEDE"
XX
SQ Sequence 3890 BP; 804 A; 974 C; 1059 G; 1053 T; 0 other;
gggggctagt ggcgctgctg caggggctgt gcgaggcacg gtggggctgc gaggtgctcg 60
ggcccgccga gagcccgtgc tcactgagcc gacccccgcg gccaccgtgc tgctcactcg 120
gggtgacgtc gcgccggggt ccccagcatg accgaactac ggcagagggt tgtccgcgag 180
gacgcacctc cggaggacaa ggaatcagag tccgaagcaa agctagatgg agagacagcg 240
tctgacagcg agagccgagc ggaaacagct cccctaccaa cctccgtaga tgacacccca 300
gaggtcctta acagggccct ttccaacctg tcctcaaggt ggaagaactg gtgggtgaga 360
ggcatcctga ctttggccat gatcgcgttt ttcttcatta tcatttacct gggaccaatg 420
gttttgatga tgattgttat gtgtgtccag attaagtgtt tccatgaaat aatcactatt 480
ggctacaatg tataccactc ctacgacctg ccctggttca ggaccctcag ctggtacttc 540
ctgctgtgtg tgaactactt cttctatggg gagacagtga cggactactt cttcactctg 600
gtccagagag aggagccttt gcggatcctc agtaaatacc accggttcat ctcctttgcc 660
ctgtatctga caggattctg catgtttgta ctgagtctag ttaagaagca ttatcggctg 720
cagttctaca tgtttggctg gacccatgtg accttgctta ttgtcgtaac gcagtcacac 780
cttgttatcc ataacttgtt tgaaggaatg atatggttta ttgttcccat ctcgtgcgtc 840
atctgcaatg acattatggc ctatatgttt ggctttttct ttggtcggac cccactcatt 900
aagctctctc caaagaagac ctgggaaggc ttcattgggg gcttctttgc cactgtggtg 960
tttggccttt tgctctccta tgtgatgtct gggtacagat gcttcgtgtg tcccgtggaa 1020
tacaacaatg acaccaacag cttcactgtg gactgtgagc cgtctgacct attccgcctg 1080
caggagtaca acatccctgg ggtgatccag tcggccattg gctggaaaac ggtgaggatg 1140
taccctttcc agatccacag catcgccctc tccaccttcg cctcgctcat cggccctttc 1200
ggagggttct tcgccagtgg attcaaacgg gcctttaaaa tcaaagattt tgccaatacc 1260
attcccggtc atggaggcat catggatcgc tttgactgcc agtacctgat ggccaccttt 1320
gtcaatgtgt acatcgccag ctttatcagg ggtccaaacc caagcaaact gatccagcag 1380
tttctgacgt tgcggccaga tcagcagctt cacatcttca acacgctcaa gtctcaccta 1440
actgacaagg ggattctgac atctgccttg gaagatgagt agagtccacc tggggcccag 1500
agagctggag caggatggag tgggggccag tcgccaaggc cgcccagctg ctgtgactta 1560
gataatgaaa agcttcaact caccaccgtc attttttttt ctttttcctt tttgtgcgtg 1620
tgtggttttt aatctgtata tactgtctgt ttatagtgtg ggcagtgagt aagctgtagc 1680
tttgagttgc aaagaagtca caggaaagaa ccatttgggt ttctgaagta caagtattga 1740
gcaacatgaa gggcagtgtt gcccagctca gggtgtctgc ttggtggctc taacccctgc 1800
ccatccagtt gtttctgggc tgtgcgagag atcatacatt gatctgtgtg tgatgagttg 1860
agggctttcc cacctgcacg ggccttcacg ggctccacgc ttttgctgtc cttgacacct 1920
ctcgttgggg cttctgcagg catctctgtc tgagagcagt gggggctgcc ctctgtagag 1980
ctgtgagagc agtgggggct gccctctgta gagctgtgag agcagtgggg ggctgccctc 2040
tgtagagctg tgagagcagt ggggggctgc cctctgtaga gctgtgagag cagtgggggc 2100
tgccctctgt agagctgtga gagcagtggg ggctgccctc tgtagagctg tgagagcagt 2160
gggggctgcc ctctgtagag ctgtgaggga gaggctttct gatcagatga acatctgtcc 2220
aagccaaaat tctgcagagg gcaggtgagc tttgcttatg tagtttgctt tcaccatata 2280
gactgagaga agatttcaga cttctttttc tcagaaagca tgaagaattt atgaagtatg 2340
gaaaagaagc ccttacatat tccagatgtg tgcagcaggg ggcactgtcc cagccctctc 2400
tgccccagcc aggcacagtg gcctctagag ggtggtcctg tagaccgcac cttttagagt 2460
cgaggcctct gtggttgtgc cgcgggtttg ctgctgtgct gagtccttct gggggagccc 2520
taagaggtgg ggagcagagg acttttgctc agacaccctt tgcctggaag cccacttgtg 2580
ttgctgctgt gttgtgtata tagtattctc gagatgagcg tatgtgtgtc tgtttaaaag 2640
tcaccttgtt tcctacatga ttttagtcat acccaaacgt cctcagaatc cctacatcct 2700
gcttagaact gtggccggcc taatctgtca agaggcttgg ctcttcaaga ctcagtgtcc 2760
actttatcaa atgtgaccgg tgtagctgta gtttgtactt tcctggggac cttctgctgg 2820
ggtttgtgta agctgtgatt ctttcccttc ctaataggtt gagcttgaca tggaaaggag 2880
cagttggcag ggaaggaact tattccccaa gagtggtaac taacccacag ccctgctcgg 2940
tgtgcccacc gctgagaggc tgcagtgact tccccaagta ccgtggtctg tgctaatttg 3000
ttttcagatt agtcttcctg tggcctccaa cactcagcca gccctcagag tgtccgctgt 3060
gcgcacgggg gcggggcggg gcgggcagct ccttgtctct cagctttgac tgacttgtcc 3120
gcattgggga tttttgttct cagctcccag gccgcactga acacagtgtt gctgccttca 3180
gtttggttct ggccatgagg cccctagtgg gagctttgcc cttagggctg tcctctgact 3240
tgccctcaaa gttcaccaat tcggcaactc catggagacg gtcgtgtcac tctcagcccc 3300
tgttgctatt aagtcatgtc atgggcaccc ggaaaaggaa atacactgag gtgtatttta 3360
caattgctcc ttaagattct cagtggagat taggagcaac actgcacttc tgatagaaaa 3420
atggccttgg atcactaaac taggtagaga agggcacacc acaccccagc gccccaggag 3480
ccaaaactca cgctcgggca gcagcagctg aggcttgagg aagctggtgt cctaagacac 3540
tgaaacccag tgctcattgg agctgccagc cacaggtttc tattctgagt tctccagtct 3600
tgtgaaagag gagaatttcc cagtcaggta gccaggagaa cagtgccacc ctgcgattgt 3660
gccaccctgt gattgtatag cgtgttgttt gttccagtaa gcaggcaggc ccagagactg 3720
ctttctcagc accgcacaga tctcagtggg tcacataact tgctttacac tcatcttgtt 3780
gtgtcagaaa taaagtgttc gtgcttttcc ttgtcaggag tcccgtgttt gtcacttgtt 3840
gtgtggtttt atgtttcccg ctgtgtgagc ataaacactg tgcagtttcc 3890
//