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EBI Dbfetch

ID   AK036277; SV 1; linear; mRNA; HTC; MUS; 4026 BP.
XX
AC   AK036277;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 14)
XX
DE   Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched
DE   library, clone:9630053D03 product:N-myc downstream regulated 3, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4026
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 723f01fa1a919fe899f4a187ba579b6c.
DR   Ensembl-Gn; ENSMUSG00000027634; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000069600; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000072298; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109558; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=9630053D03
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4026
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="16 days neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="9630053D03"
FT                   /tissue_type="cerebellum"
FT                   /db_xref="taxon:10090"
FT   CDS             84..845
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="N-myc downstream regulated 3 (MGD|MGI:1352499
FT                   GB|NM_013865, evidence: BLASTN, 100%, match=832)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8CBD0"
FT                   /db_xref="InterPro:IPR004142"
FT                   /db_xref="InterPro:IPR029058"
FT                   /db_xref="MGI:MGI:1352499"
FT                   /db_xref="UniProtKB/TrEMBL:Q8CBD0"
FT                   /protein_id="BAC29369.1"
FT                   /translation="MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGMVHVT
FT                   IRGLPKGNRPVILTYHDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSF
FT                   PTGYQYPTMDELAEMLPPVLTHLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINI
FT                   DPCAKGWIDWAASKLSGFTTNIVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENL
FT                   QLFLGSYNGRRDLEIERPILGQNDNRLKTLK"
XX
SQ   Sequence 4026 BP; 1013 A; 993 C; 877 G; 1143 T; 0 other;
     ggctgctgta gattgacggc cccgcgctag cgcttcagag ttcctggttc atccttgaga        60
     ctcatctgct ctgagccatc ctcatggatg aacttcagga tgttcaactc acagagatca       120
     aaccgcttct aaatgataag aatggcacac gaaacttcca ggactttgac tgtcaggaac       180
     atgacattga aacaccgcat ggtatggtcc acgtcaccat aagaggctta ccaaaaggaa       240
     acagacctgt tatcctgaca taccacgaca ttgggctcaa ccataagtcc tgcttcaaca       300
     cattcttcaa ctttgaggat atgcaagaga tcacccagca ctttgctgtc tgtcacgtgg       360
     acgctcctgg ccaacaagaa gcagcaccct ccttccccac agggtaccag taccccacca       420
     tggatgagct agctgagatg ctgcctcctg ttctcacaca cttaagtatg aagagcatca       480
     ttggtattgg ggttggagca ggagcctaca ttctcagcag atttgcactg aatcatccag       540
     agctggtgga aggtcttgtg ctcattaaca ttgacccgtg tgctaagggc tggattgact       600
     gggcagcttc caaactctca ggttttacca ccaacattgt ggacataatt ctggctcatc       660
     actttggcca ggaggagttg caggccaatt tggacctcat tcaaacctac agactgcaca       720
     ttgctcaaga tatcaaccaa gaaaacctcc agctcttcct gggttcctat aatgggcgca       780
     gagacctgga gatcgaaagg cctatactgg gccaaaatga taacagattg aaaacgctaa       840
     agtaagtgcc tgtctccccc ctgagtcgct gcctgccacg actgatccgt gttcagcagt       900
     gttggtgctc ccttgctgac cgagtgctct tcttccccct ggtcctaggt gttctacctt       960
     actggtggtg ggggacaatt cacctgctgt ggaggctgtg gtaagtggtg ctgatgtagt      1020
     ccagcctgta tggcaggcac cctgccgaca ccgttgacac atgatcacac taggtcatgc      1080
     cgtgtctaat cgcatccacc aggttctact gtgacatact ttgaaaatta gttccccaga      1140
     agtgtcacca ggtctcctca gattgatcag tgtggtcctt gatggctctg tgtgccactg      1200
     tccactctgg cagtaactgt cagatgttta cagtcagcct tccacttggg gagttaccac      1260
     cacacatcca gtaggtgcag aagctgcaga gagcctttcc atagcctttc ccttgtgttg      1320
     gattaaataa catgttccat gatttttaag gtataactta tccaaataaa taaggccttt      1380
     ttattttact tccacgctcc tgtttttaga gaggtgtggc ttcatctgaa agacagagag      1440
     cccacttctc taatcacaga cccacctctc ttgccagagc ccctcatgcc tctaatggta      1500
     ggaacttacg agtcatcccc gcaatatcaa ggagaaagcc cccatgtgct tttttttttt      1560
     tttttaagat ttatttatta ttattcatta gtacactgta gctgtcttca gatgcaccag      1620
     aagagggtgt cagatctcat tacggatggt tgtgagccac catgtggttg ctgggatttg      1680
     aactcaggac cttcggaaga gcagtcagtg ctcttaaccg ctgagccatc tcgccagccc      1740
     ccccatgtgc tattgacacc tggttgtgct cactagttca gcatcatccg gagcatctcc      1800
     tattcagtgc tgaggagtaa cagaagctat ctccgttcca ggatttagga aatgcaaaga      1860
     tgtgtcagag accagtgatc agaggtgtag agcattagcg ttgtctccaa ccctgcctga      1920
     aaacacacac agcctcggtg actgtgggta gttaaccgtg gaggcataga acattatatg      1980
     aattacaacg tagtggagaa tggaaagcat ggtttattat gcagagacag aagttgatct      2040
     cctagaaaat atttatggct tgtctacgat actctgagca ctgtgactag atagccactt      2100
     taaaattcta cctgtagaat cgtgttttct gtacaaaaag gatacgtttt ttttaccctg      2160
     cctgcattgt cccttgcgta gagcagactg agcctctgac ccgaatgtgg cttctcgatc      2220
     atctcctggt tttagaggag ttgtgtaagc ctgcccttca gcaatcctga gatcccaagt      2280
     tcacctggat tgctgattct ggcataggta actcgatcca ctccctgacc gctcactgcc      2340
     tcctcagtac cacacttgtg ccactgctct gctaaagcac tcaaaccctg tcagctcagt      2400
     cagctccatg cctcccggag tttgcctgtg tgtgtcggca ctgtacactc gccaccacag      2460
     tgacttgcgt gccctgcaca gtcctccttt ctccacctct gcacgtctcc aggcacccac      2520
     ctcttcttgt ctgtctctaa aaaccctact ggtgttctac gtgttcattg cacacagcag      2580
     tgatggtttt gaactgactt cattttcctt tttggtataa tcacacacgt tcctagatcc      2640
     ccagctctta tcgcagcttc tgtgtgtata ttcttagaaa atgtgataag gaaaagttgt      2700
     ttgattaagt gattaaattt gattaaagtt gtttgataaa aattatttga ttaaaatatt      2760
     ggcctgctgg agctggaggt atatggctca agtgataggg catatactca gagataatct      2820
     tcccagaccg ttttcatgga gccaagatca caaacaaaga gacgaggcag gccatcatcc      2880
     ccgattttga tgaccatcac aatggaacag tcacaaagaa ttcagcttca cactggagag      2940
     ccagagatct tgagtcagaa gagtcagagg ctggggcgtg gcagccgtct gtccatccgt      3000
     ccattccccc caggcaggag gggctgagca gggaggtgga cacaggctta ggcccagcgg      3060
     acacaactta gtccaactgt gctgggaagg catggaggag atccagtagg gcggggccac      3120
     agtcctgctc acctctctga gaagggaggt gctgtcccac atgtcttatg gactttagag      3180
     tccttgtgct gttcgttaaa gacaaggaaa tgacattttt tttttagata aactctgagc      3240
     cattagccaa gcaagcatca catatgacct gatctctctg attgtaagat cactagcatg      3300
     gtgattctag cagtttatag aattgttttc tttttcaggt tgaatgtaat tctcgcctcg      3360
     accctataaa tacaactttg ctaaaggtag tgtatttgct ctcatagctg accattgtga      3420
     taactgagat acattccagc tctgtgtttt aagctacact gtgtgattct cttctcccca      3480
     cttataggca tttgtgtttg ttctctctgt ttctgtttct gtctttcttt ctctaccccc      3540
     accccccttc tctctctctc tctctctctc tctctctctc tctggaagaa taagaaaaaa      3600
     aattcatgaa ttacatttat gtatttattg gtagggaaca acacatgcca aggcacactt      3660
     ggaagttaga acaacttcct tctctccttc tatcctatgg gccttaggga gggcactcag      3720
     ggtatcaggc tcagctgcaa ccactgggac cctccgagcc atctcaccag cccagagaat      3780
     atattttcta aattactttc taaatttata tcctgcccac tgaagaaaat atcgaataaa      3840
     aatttgttta aaaaaaaaag aaatatgtag tgaaatatta gtgtctgttt tctatgtttt      3900
     tagatcatat cagaggagct ggaggtctag gcatggtggt gcattccttt aatcccatca      3960
     ctcagaaggc acaagtggat ttttagtgag attgagacta gcctgagcta caaagagacg      4020
     ctgtcc                                                                 4026
//


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