ID AK035512; SV 1; linear; mRNA; HTC; MUS; 2776 BP.
XX
AC AK035512;
XX
DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 14)
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DE Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched
DE library, clone:9530058K19 product:similar to CALCIUM-ACTIVATED CHLORIDE
DE CHANNEL-2 [Homo sapiens], full insert sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2776
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 13162f34c54ddb236fbe6b3694b3d2f9.
DR Ensembl-Gn; ENSMUSG00000036960; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0027957; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0027916; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0027882; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0027928; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0027658; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0028371; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0027111; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0027633; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0027773; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0027740; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0027884; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0027773; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0028430; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0026834; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0027191; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000040465; mus_musculus.
DR Ensembl-Tr; ENSMUST00000198993; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0064150; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0064178; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0064121; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0064101; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0063790; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0064595; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0064106; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0063750; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0063864; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0063821; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0064006; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0063823; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0064815; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0063641; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0063048; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=9530058K19
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FH Key Location/Qualifiers
FH
FT source 1..2776
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="male"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="9530058K19"
FT /tissue_type="urinary bladder"
FT /db_xref="taxon:10090"
FT CDS 145..2169
FT /codon_start=1
FT /transl_table=1
FT /note="putative"
FT /note="similar to CALCIUM-ACTIVATED CHLORIDE CHANNEL-2
FT [Homo sapiens] (SPTR|Q9Y6N2, evidence: FASTY, 70.4%ID,
FT 84.5%length, match=2254)"
FT /db_xref="GOA:Q8BG22"
FT /db_xref="InterPro:IPR002035"
FT /db_xref="InterPro:IPR004727"
FT /db_xref="InterPro:IPR013642"
FT /db_xref="InterPro:IPR036465"
FT /db_xref="MGI:MGI:2139758"
FT /db_xref="UniProtKB/Swiss-Prot:Q8BG22"
FT /protein_id="BAC29086.1"
FT /translation="MTHRDSTGPVIGLKLVTLLFTLSPELLFLGAGLKLKENGYDGLLV
FT AINPRVPEDLKLITNIKEMITEASFYLFNATKRRVFFRNVQILVPATWTDHNYSRVRQE
FT SYDKANVIVAEQSEEHGDDPYTLQHRGCGQEGRYIHFTPSFLLNDELAAGYGARGRVFV
FT HEWAHLRWGVFDEYNNDKPFYVNGRNEIQVTRCSSDITGVFVCEKGLCPHEDCIISKIF
FT REGCTFLYNSTQNATGSIMFMPSLPSVVEFCNESTHNQEAPNLQNQVCSLRSTWDVITA
FT SSDLNHSLPVHGVGLPAPPTFSLLQAGDRVVCLVIDVSRKMAEGDRLLRLQQAAELYLM
FT QVVEAHTFVGIVTFDSKGEIRASLQQIYSDDDRKLLVSYLPTAVSTDAETNICAGVKKG
FT FEVVEERNGRADGSVLILVTSGADEHIANCLLTSMNSGSTIHSMALGSSAARKVGELSR
FT LTGGLKFFIPDKFTSNGMTEAFVRISSGTGDIFQQSLQVESVCETVQPQHQLADTMTVD
FT SAVGNDTLFLVTWQTGGPPEIALLDPSGRKYNTGDFIINLAFRTASLKIPGTAKHGHWT
FT YTLNNTHHSPQALKVTVASRASSLAMSPATLEAFVERDSTYFPQPVIIYANVRKGLHPI
FT LNATVVATVEPEAGDPVVLQLLDGGAGADVIRNDGIYSR"
XX
SQ Sequence 2776 BP; 745 A; 679 C; 663 G; 689 T; 0 other;
agagggtttt caaagaaggc aactcctcat catgtattgt aagaccttct aagttccgaa 60
agaagccagc tgcttccaca ttgatcagct gactcaaggt acccagcagg ctccccgtga 120
ataaaccaga ggtttcactg caagatgacc cacagggaca gcacaggacc tgtcatcggg 180
ctgaaacttg tgacccttct gttcacccta agtccagaac ttctgttcct gggagctgga 240
ttgaagctga aagagaatgg ctatgatgga ttgcttgttg ccatcaatcc ccgggtaccc 300
gaggatctga agctgattac aaacattaag gaaatgataa ccgaagcttc cttttacctg 360
ttcaatgcga ccaagaggag ggtgtttttc agaaatgtac agattttagt acctgccact 420
tggacggatc ataattacag tagagtaaga caagaatcct atgacaaggc aaatgtcata 480
gtggctgagc agagtgagga acacggagat gatccctaca ccctacagca cagagggtgt 540
gggcaagagg ggagatacat ccacttcacc cccagcttcc tactcaacga tgagttagcc 600
gcaggctatg gtgcgcgagg cagagtgttt gtccacgagt gggcccatct ccgctggggt 660
gtgttcgatg aatataacaa cgacaaaccg ttctacgtga atggacggaa tgagattcaa 720
gtcaccaggt gttcatctga cattacaggc gtttttgtgt gtgaaaaggg cctctgcccc 780
catgaagact gcattattag caagattttt agggaaggat gcacattcct ctacaacagc 840
acccagaatg caactggatc aataatgttc atgccaagtt taccttctgt ggttgaattc 900
tgtaacgaaa gtacacacaa ccaagaagct ccaaacctcc agaaccaagt gtgcagcctc 960
agaagcactt gggacgtgat cacagcctcc tccgacctga accatagcct ccccgtgcat 1020
ggggttggac ttccagcccc tcccacgttc tccctcttgc aggctggtga ccgagtggtc 1080
tgcttagtga ttgatgtgtc caggaagatg gcagagggag acagactgct ccgacttcaa 1140
caagcagccg aactgtactt gatgcaggtt gtcgaagctc acactttcgt gggcattgtc 1200
acttttgata gcaaaggaga aatccgagcc tcgctgcagc aaatttacag tgacgatgac 1260
cggaagctgc tggtttcata cctgccgacc gccgtgtcca ctgacgcaga aacgaacatc 1320
tgtgcagggg ttaagaaagg ctttgaggtg gttgaggagc ggaatggaag agctgacggc 1380
tctgtcctga tattagtgac cagtggagca gatgaacaca ttgccaactg cctgctcacc 1440
tcgatgaaca gtggatccac cattcactcc atggccctgg gttcctctgc agccagaaaa 1500
gtgggggaat tatcacgtct tacaggaggt ctaaagttct tcattccaga taaatttact 1560
tctaatggaa tgactgaagc tttcgttcga atctcttctg gaacaggaga cattttccag 1620
caaagcttac aggttgagag cgtgtgcgaa actgtgcaac cccagcacca gctggcggat 1680
actatgactg tggatagcgc cgtgggcaat gacacacttt ttctagtcac gtggcagact 1740
ggtggccccc ctgagattgc attattggat cctagcggaa gaaaatacaa cactggtgac 1800
tttatcatca acctggcctt tcggacagcc agccttaaga ttccagggac agctaagcat 1860
gggcactgga cttacacgct gaacaacacc caccattctc cccaagctct gaaagtgaca 1920
gtggcctctc gtgcctccag cctggccatg tccccagcca ctctggaagc ctttgtggaa 1980
agagacagca cctattttcc tcagccagtg atcatttatg cgaatgtgag gaaaggtctg 2040
catcccattc tcaatgccac cgtggtggcg acagtggaac cagaggctgg agatcccgtt 2100
gtactgcaac ttttggatgg cggagcaggt gcagatgtta taagaaatga tgggatttac 2160
tccagataat attcaaatga atgctcccaa aaacttgggc cacagacctg tgaaggagag 2220
gtggggcttc agtcgagtga gctcgggagg ctccttctcc gtgctgggag tcccagacgg 2280
cccccaccct gacatgtttc caccgtgcaa aattactgac ctggaagcca tgaaagtgga 2340
agacgacgtc gtcctctctt ggacggcacc tggggaagac ttcgatcagg ggcaaagtag 2400
gcttgctgat ttgtttcata agtacctttc cacagacagt atcttcccaa cacccccccc 2460
cccactgtgt gtgtgtagtc attttttatt gttttccata tcaacattac aaaaagcttc 2520
actagttaaa gcaaaagcta gagacagctc aataacacaa catgaacttt acacaattac 2580
tcatagggag gatgacatca tttttttgat tcttgctttc aaaaaaatat caagtgctcc 2640
tggctcacat tttagcatga gtctttacat tgcaacttgg tattcagtga tttctcacac 2700
gtatattcct tgatagtttg acttttgtgg ttattttcat tactaatctt caccaactaa 2760
aaaccttata caaatt 2776
//
