Dbfetch
ID AK033734; SV 1; linear; mRNA; HTC; MUS; 3244 BP. XX AC AK033734; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, DE clone:9130403O08 product:platelet-derived growth factor, C polypeptide, DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3244 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; f0f717967c7af4285fcc18d6ac7d5ac0. DR Ensembl-Gn; ENSMUSG00000028019; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0027321; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0027283; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0027251; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0027294; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027038; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0027740; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0026485; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0027013; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0027149; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0027117; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0027257; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0027136; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0027798; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0026219; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0026563; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000029652; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0061298; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0061321; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0061259; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0061247; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0060944; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0061726; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0061236; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0060918; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0061011; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0060997; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0061152; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0060963; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0061911; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0060788; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0060214; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=9130403O08 XX FH Key Location/Qualifiers FH FT source 1..3244 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="9130403O08" FT /tissue_type="cecum" FT /db_xref="taxon:10090" FT CDS 751..1788 FT /codon_start=1 FT /transl_table=1 FT /note="platelet-derived growth factor, C polypeptide FT (MGD|MGI:1859631 GB|NM_019971, evidence: BLASTN, 99%, FT match=2690)" FT /note="putative" FT /db_xref="GOA:Q8CI19" FT /db_xref="InterPro:IPR000072" FT /db_xref="InterPro:IPR000859" FT /db_xref="InterPro:IPR029034" FT /db_xref="InterPro:IPR029817" FT /db_xref="InterPro:IPR035914" FT /db_xref="MGI:MGI:1859631" FT /db_xref="UniProtKB/Swiss-Prot:Q8CI19" FT /protein_id="BAC28455.1" FT /translation="MLLLGLLLLTSALAGQRTGTRAESNLSSKLQLSSDKEQNGVQDPR FT HERVVTISGNGSIHSPKFPHTYPRNMVLVWRLVAVDENVRIQLTFDERFGLEDPEDDIC FT KYDFVEVEEPSDGSVLGRWCGSGTVPGKQTSKGNHIRIRFVSDEYFPSEPGFCIHYSII FT MPQVTETTSPSVLPPSSLSLDLLNNAVTAFSTLEELIRYLEPDRWQVDLDSLYKPTWQL FT LGKAFLYGKKSKVVNLNLLKEEVKLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCG FT GNCACCLHNCNECQCVPRKVTKKYHEVLQLRPKTGVKGLHKSLTDVALEHHEECDCVCR FT GNAGG" FT regulatory 3216..3221 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 3244 FT /note="putative" XX SQ Sequence 3244 BP; 821 A; 810 C; 763 G; 850 T; 0 other; ggccacctct cctcagccct gcgtcctgcc ctgccttagg gcaggcatcc gagcgctcgc 60 gactccgagc cgcccaagct ctcccggctt cccgcagcac ttcgccggta cccgagggaa 120 cttcggtggc caccgactgc agcaaggagg aggctccgcg gtggatccgg gccagtcccg 180 agtcgtcccc gcggcctctc tgcccgcccg ggacccgcgc ggcactcgca gggcacggtc 240 ccctcccccc aggtgggggt ggggcgccgc ctgccgcccc gatcagcagc tttgtcattg 300 atcccaaggt gctcgcctcg ctgccgacct ggcttccagt ctggcttggc gggaccccga 360 gtcctcgcct gtgtcctgtc ccccaaactg acaggtgctc cctgcgagtc gccacgactc 420 atcgccgctc ccccgcgtcc ccaccccttc tttcctccct cgcctacccc caccccccgc 480 acttcggcac agctcaggat ttgtttaaac cttgggaaac tggttcaggt ccaggttttg 540 ctttgatcct tttcaaaaac tggagacaca gaagagggct ctaggaaaaa cttttggatg 600 ggattatgtg gaaactaccc tgcgattctc tgctgccaga gccggccagg cgcttccacc 660 gcagcgcagc ctttccccgg ctgggctgag ccttggagtc gtcgcttccc cagtgcccgc 720 cgcgagtgag ccctcgcccc agtcagccaa atgctcctcc tcggcctcct cctgctgaca 780 tctgccctgg ccggccaaag aacggggact cgggctgagt ccaacctgag cagcaagttg 840 cagctctcca gcgacaagga acagaacgga gtgcaagatc cccggcatga gagagttgtc 900 actatatctg gtaatgggag catccacagc ccgaagtttc ctcatacata cccaagaaat 960 atggtgctgg tgtggagatt agttgcagta gatgaaaatg tgcggatcca gctgacattt 1020 gatgagagat ttgggctgga agatccagaa gacgatatat gcaagtatga ttttgtagaa 1080 gttgaggagc ccagtgatgg aagtgtttta ggacgctggt gtggttctgg gactgtgcca 1140 ggaaagcaga cttctaaagg aaatcatatc aggataagat ttgtatctga tgagtatttt 1200 ccatctgaac ccggattctg catccactac agtattatca tgccacaagt cacagaaacc 1260 acgagtcctt cggtgttgcc cccttcatct ttgtcattgg acctgctcaa caatgctgtg 1320 actgccttca gtaccttgga agagctgatt cggtacctag agccagatcg atggcaggtg 1380 gacttggaca gcctctacaa gccaacatgg cagcttttgg gcaaggcttt cctgtatggg 1440 aaaaaaagca aagtggtgaa tctgaatctc ctcaaggaag aggtaaaact ctacagctgc 1500 acaccccgga acttctcagt gtccatacgg gaagagctaa agaggacaga taccatattc 1560 tggccaggtt gtctcctggt caagcgctgt ggaggaaatt gtgcctgttg tctccataat 1620 tgcaatgaat gtcagtgtgt cccacgtaaa gttacaaaaa agtaccatga ggtccttcag 1680 ttgagaccaa aaactggagt caagggattg cataagtcac tcactgatgt ggctctggaa 1740 caccacgagg aatgtgactg tgtgtgtaga ggaaacgcag gagggtaact gcagccttcg 1800 tagcagcaca cgtgagcact ggcattctgt gtacccccac aagcaacctt catccccacc 1860 agcgttggcc gcagggctct cagctgctga tgctggctat ggtaaagatc ttactcgtct 1920 ccaaccaaat tctcagttgt ttgcttcaat agccttcccc tgcaggactt caagtgtctt 1980 ctaaaagacc agaggcacca agaggagtca atcacaaagc actgccttct agaggaagcc 2040 cagacaatgg tcttctgacc acagaaacaa atgaaatgaa tgtagatcgc tagcaaactc 2100 tggagtgaca gcatttcttt tccactgaca gaatggtgta gcttagttgt cttgatatgg 2160 gcaagtgatg tcagcacaag aaaatggtga aaaacacaca cttgattgtg aacaatgcac 2220 aaatacttgg atttctccaa cctgtttgca tagatagaca gatgctctgt tttctacaaa 2280 ctcaaagctc ttacagagca gctatgttaa taggaattaa atgtgccatg ctgaaaggaa 2340 agactgaagt tttcaatgct tggcaacttc tccgcaattt ggaggaaagg tgcggtcatg 2400 gtttggagaa agcacacctg cacacaggag tggccttccc ttcccttccc tctgaggtgg 2460 cttcctgtgt ttcattgtgt atatttttat attctccttt tgacattata actgttggct 2520 ttcctaatct tgttaaatat ttctattttt accaaaggta tttaatattc ttttttatga 2580 caacctagag caattatttt tagcgtgata attttttttt ctaaacaaaa ttgttatagc 2640 cagaagaaca aagatgattg atataaaaat cttgttgctc tgacaaaaac atatgtattt 2700 cttccttgta tggtgctaga gcttagcgtc atctgcattt gaaaagatgg aatggggaag 2760 tttttagaat tggtaggtcg cagggacagt ttgataacaa ctgtactatc atcaattccc 2820 aattctgttc ttagagctac gaacagaaca gagcttgagt aaatatggag ccattgctaa 2880 cctacccctt tctatgggaa ataggagtat agctcagaga agcacgtccc cagaaacctc 2940 gaccatttct aggcacagtg ttctgggcta tgctgcgctg tatggacata tcctatttat 3000 ttcaatacta gggttttatt acctttaaac tctgctccat acacttgtat taatacatgg 3060 atatttttat gtacagaagt atatcattta aggagttcac ttattatact ctttggcaat 3120 tgcaaagaaa atcaacataa tacattgctt gtaaatgctt aatctgtgcc caagttttgt 3180 ggtgactatt tgaattaaaa tgtattgaat catcaaataa aataatctgg ctattttggg 3240 gact 3244 //