ID AK033734; SV 1; linear; mRNA; HTC; MUS; 3244 BP.
XX
AC AK033734;
XX
DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 15)
XX
DE Mus musculus adult male cecum cDNA, RIKEN full-length enriched library,
DE clone:9130403O08 product:platelet-derived growth factor, C polypeptide,
DE full insert sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3244
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; f0f717967c7af4285fcc18d6ac7d5ac0.
DR Ensembl-Gn; ENSMUSG00000028019; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0027321; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0027283; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0027251; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0027294; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0027038; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0027740; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0026485; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0027013; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0027149; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0027117; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0027257; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0027136; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0027798; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0026219; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0026563; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000029652; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0061298; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0061321; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0061259; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0061247; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0060944; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0061726; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0061236; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0060918; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0061011; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0060997; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0061152; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0060963; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0061911; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0060788; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0060214; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=9130403O08
XX
FH Key Location/Qualifiers
FH
FT source 1..3244
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="male"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="9130403O08"
FT /tissue_type="cecum"
FT /db_xref="taxon:10090"
FT CDS 751..1788
FT /codon_start=1
FT /transl_table=1
FT /note="platelet-derived growth factor, C polypeptide
FT (MGD|MGI:1859631 GB|NM_019971, evidence: BLASTN, 99%,
FT match=2690)"
FT /note="putative"
FT /db_xref="GOA:Q8CI19"
FT /db_xref="InterPro:IPR000072"
FT /db_xref="InterPro:IPR000859"
FT /db_xref="InterPro:IPR029034"
FT /db_xref="InterPro:IPR029817"
FT /db_xref="InterPro:IPR035914"
FT /db_xref="MGI:MGI:1859631"
FT /db_xref="UniProtKB/Swiss-Prot:Q8CI19"
FT /protein_id="BAC28455.1"
FT /translation="MLLLGLLLLTSALAGQRTGTRAESNLSSKLQLSSDKEQNGVQDPR
FT HERVVTISGNGSIHSPKFPHTYPRNMVLVWRLVAVDENVRIQLTFDERFGLEDPEDDIC
FT KYDFVEVEEPSDGSVLGRWCGSGTVPGKQTSKGNHIRIRFVSDEYFPSEPGFCIHYSII
FT MPQVTETTSPSVLPPSSLSLDLLNNAVTAFSTLEELIRYLEPDRWQVDLDSLYKPTWQL
FT LGKAFLYGKKSKVVNLNLLKEEVKLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCG
FT GNCACCLHNCNECQCVPRKVTKKYHEVLQLRPKTGVKGLHKSLTDVALEHHEECDCVCR
FT GNAGG"
FT regulatory 3216..3221
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 3244
FT /note="putative"
XX
SQ Sequence 3244 BP; 821 A; 810 C; 763 G; 850 T; 0 other;
ggccacctct cctcagccct gcgtcctgcc ctgccttagg gcaggcatcc gagcgctcgc 60
gactccgagc cgcccaagct ctcccggctt cccgcagcac ttcgccggta cccgagggaa 120
cttcggtggc caccgactgc agcaaggagg aggctccgcg gtggatccgg gccagtcccg 180
agtcgtcccc gcggcctctc tgcccgcccg ggacccgcgc ggcactcgca gggcacggtc 240
ccctcccccc aggtgggggt ggggcgccgc ctgccgcccc gatcagcagc tttgtcattg 300
atcccaaggt gctcgcctcg ctgccgacct ggcttccagt ctggcttggc gggaccccga 360
gtcctcgcct gtgtcctgtc ccccaaactg acaggtgctc cctgcgagtc gccacgactc 420
atcgccgctc ccccgcgtcc ccaccccttc tttcctccct cgcctacccc caccccccgc 480
acttcggcac agctcaggat ttgtttaaac cttgggaaac tggttcaggt ccaggttttg 540
ctttgatcct tttcaaaaac tggagacaca gaagagggct ctaggaaaaa cttttggatg 600
ggattatgtg gaaactaccc tgcgattctc tgctgccaga gccggccagg cgcttccacc 660
gcagcgcagc ctttccccgg ctgggctgag ccttggagtc gtcgcttccc cagtgcccgc 720
cgcgagtgag ccctcgcccc agtcagccaa atgctcctcc tcggcctcct cctgctgaca 780
tctgccctgg ccggccaaag aacggggact cgggctgagt ccaacctgag cagcaagttg 840
cagctctcca gcgacaagga acagaacgga gtgcaagatc cccggcatga gagagttgtc 900
actatatctg gtaatgggag catccacagc ccgaagtttc ctcatacata cccaagaaat 960
atggtgctgg tgtggagatt agttgcagta gatgaaaatg tgcggatcca gctgacattt 1020
gatgagagat ttgggctgga agatccagaa gacgatatat gcaagtatga ttttgtagaa 1080
gttgaggagc ccagtgatgg aagtgtttta ggacgctggt gtggttctgg gactgtgcca 1140
ggaaagcaga cttctaaagg aaatcatatc aggataagat ttgtatctga tgagtatttt 1200
ccatctgaac ccggattctg catccactac agtattatca tgccacaagt cacagaaacc 1260
acgagtcctt cggtgttgcc cccttcatct ttgtcattgg acctgctcaa caatgctgtg 1320
actgccttca gtaccttgga agagctgatt cggtacctag agccagatcg atggcaggtg 1380
gacttggaca gcctctacaa gccaacatgg cagcttttgg gcaaggcttt cctgtatggg 1440
aaaaaaagca aagtggtgaa tctgaatctc ctcaaggaag aggtaaaact ctacagctgc 1500
acaccccgga acttctcagt gtccatacgg gaagagctaa agaggacaga taccatattc 1560
tggccaggtt gtctcctggt caagcgctgt ggaggaaatt gtgcctgttg tctccataat 1620
tgcaatgaat gtcagtgtgt cccacgtaaa gttacaaaaa agtaccatga ggtccttcag 1680
ttgagaccaa aaactggagt caagggattg cataagtcac tcactgatgt ggctctggaa 1740
caccacgagg aatgtgactg tgtgtgtaga ggaaacgcag gagggtaact gcagccttcg 1800
tagcagcaca cgtgagcact ggcattctgt gtacccccac aagcaacctt catccccacc 1860
agcgttggcc gcagggctct cagctgctga tgctggctat ggtaaagatc ttactcgtct 1920
ccaaccaaat tctcagttgt ttgcttcaat agccttcccc tgcaggactt caagtgtctt 1980
ctaaaagacc agaggcacca agaggagtca atcacaaagc actgccttct agaggaagcc 2040
cagacaatgg tcttctgacc acagaaacaa atgaaatgaa tgtagatcgc tagcaaactc 2100
tggagtgaca gcatttcttt tccactgaca gaatggtgta gcttagttgt cttgatatgg 2160
gcaagtgatg tcagcacaag aaaatggtga aaaacacaca cttgattgtg aacaatgcac 2220
aaatacttgg atttctccaa cctgtttgca tagatagaca gatgctctgt tttctacaaa 2280
ctcaaagctc ttacagagca gctatgttaa taggaattaa atgtgccatg ctgaaaggaa 2340
agactgaagt tttcaatgct tggcaacttc tccgcaattt ggaggaaagg tgcggtcatg 2400
gtttggagaa agcacacctg cacacaggag tggccttccc ttcccttccc tctgaggtgg 2460
cttcctgtgt ttcattgtgt atatttttat attctccttt tgacattata actgttggct 2520
ttcctaatct tgttaaatat ttctattttt accaaaggta tttaatattc ttttttatga 2580
caacctagag caattatttt tagcgtgata attttttttt ctaaacaaaa ttgttatagc 2640
cagaagaaca aagatgattg atataaaaat cttgttgctc tgacaaaaac atatgtattt 2700
cttccttgta tggtgctaga gcttagcgtc atctgcattt gaaaagatgg aatggggaag 2760
tttttagaat tggtaggtcg cagggacagt ttgataacaa ctgtactatc atcaattccc 2820
aattctgttc ttagagctac gaacagaaca gagcttgagt aaatatggag ccattgctaa 2880
cctacccctt tctatgggaa ataggagtat agctcagaga agcacgtccc cagaaacctc 2940
gaccatttct aggcacagtg ttctgggcta tgctgcgctg tatggacata tcctatttat 3000
ttcaatacta gggttttatt acctttaaac tctgctccat acacttgtat taatacatgg 3060
atatttttat gtacagaagt atatcattta aggagttcac ttattatact ctttggcaat 3120
tgcaaagaaa atcaacataa tacattgctt gtaaatgctt aatctgtgcc caagttttgt 3180
ggtgactatt tgaattaaaa tgtattgaat catcaaataa aataatctgg ctattttggg 3240
gact 3244
//
