Dbfetch
ID AK033286; SV 1; linear; mRNA; HTC; MUS; 2442 BP. XX AC AK033286; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched DE library, clone:8030486G21 product:hypothetical Leucine-rich repeat DE containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2442 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 5dbdf390725fcc298eb87bc7015c6193. DR Ensembl-Gn; ENSMUSG00000045287; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0018707; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0018673; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0018643; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0018647; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0018460; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0019098; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0018014; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0018430; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0018539; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0018529; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0018610; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0018555; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0019138; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0017785; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0018067; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000102514; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0030691; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0030628; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0030609; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0030623; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0030415; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0031130; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0030131; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0030328; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0030465; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0030464; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0030590; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0030448; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0031154; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0029848; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0029899; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=8030486G21 XX FH Key Location/Qualifiers FH FT source 1..2442 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="15 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="8030486G21" FT /tissue_type="testis" FT /db_xref="taxon:10090" FT CDS 288..1625 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical Leucine-rich repeat containing protein FT (InterPro|IPR001611, evidence: InterPro)" FT /note="putative" FT /db_xref="GOA:Q8K0S5" FT /db_xref="InterPro:IPR001611" FT /db_xref="InterPro:IPR003591" FT /db_xref="InterPro:IPR032675" FT /db_xref="MGI:MGI:2661375" FT /db_xref="UniProtKB/Swiss-Prot:Q8K0S5" FT /protein_id="BAC28223.1" FT /translation="MLRKGCCVELLLLLLAGELPLGGGCPRDCVCYPAPMTVSCQAHNF FT AAIPEGIPEDSERIFLQNNRITFLQQGHFSPAMVTLWIYSNNITFIAPNTFEGFVHLEE FT LDLGDNRQLRTLAPETFQGLVKLHALYLYKCGLSALPAGIFGGLHSLQYLYLQDNHIEY FT LQDDIFVDLVNLSHLFLHGNKLWSLGQGIFRGLVNLDRLLLHENQLQWVHHKAFHDLHR FT LTTLFLFNNSLTELQGDCLAPLVALEFLRLNGNAWDCGCRARSLWEWLRRFRGSSSAVP FT CATPELRQGQDLKLLRVEDFRNCTGPVSPHQIKSHTLTTSDRAARKEHHPSHGASRDKG FT HPHGHPPGSRSGYKKAGKNCTSHRNRNQISKVSSGKELTELQDYAPDYQHKFSFDIMPT FT ARPKRKGKCARRTPIRAPSGVQQASSGTALGAPLLAWILGLAVTLR" XX SQ Sequence 2442 BP; 517 A; 760 C; 651 G; 514 T; 0 other; gagaatcagg ccgccggctc ggcggagcaa gccactcgcc cggggctgag cgagcgcacc 60 gcgttggttg gcagcgccgc ggttgctagc aggcgccggt gccctgagca ccgggtttgg 120 gctcaccatg cccctgcggg accgggccgc cgggcacaag cggattcccg gcttgccccc 180 gcctcgacgc gctcggatta gctgcagctg gcgcccaggg atttgaatct ggaccccagg 240 agggagcgcg cctaggccga cctcggagcg gcggccccgc ggccaacatg cttcgcaaag 300 ggtgctgtgt ggaattgctg ctgttgctgc tcgctggaga gctacctctg ggtggtggtt 360 gtcctcgaga ctgtgtgtgc taccctgcgc ccatgactgt cagctgccag gcacacaact 420 ttgctgccat cccggagggc atcccagagg acagtgagcg catcttcctg cagaacaatc 480 gcatcacctt cctccagcag ggccacttca gccccgccat ggtcaccctc tggatctact 540 ccaacaacat cactttcatt gctcccaaca ccttcgaggg ctttgtgcat ctggaggagc 600 tagaccttgg agacaaccga cagctgcgaa cgctggcacc cgagaccttc caaggcctgg 660 tgaagcttca cgccctctac ctctataagt gtggactgag cgccctgccc gcaggcatct 720 ttggtggcct gcacagcctg cagtatctct acttgcagga caaccatatc gagtacctcc 780 aagatgacat ctttgtggac ctggtcaatc tcagtcactt gtttctccat ggtaacaagc 840 tatggagcct gggccaaggc atcttccggg gcctggtgaa cctggaccgg ttgctgctgc 900 atgagaacca gctacagtgg gttcaccaca aggctttcca tgacctccac aggctaacca 960 ccctctttct cttcaacaac agcctcactg agctgcaggg tgactgtctg gcccccctgg 1020 tggccttgga gttccttcgc ctcaatggga atgcttggga ctgtggctgc cgggcacgtt 1080 ccctgtggga atggctgcga aggttccgtg gctctagctc tgctgtcccc tgcgcgaccc 1140 ccgagctgcg gcaaggccag gatctgaagc tgctgagggt ggaggacttc cggaactgca 1200 caggaccagt gtctcctcac cagatcaagt ctcacacgct taccacctct gacagggctg 1260 cccgcaagga gcaccatccg tcccatgggg cctccaggga caaaggccac ccacatggcc 1320 atccgcctgg ctccaggtca ggttacaaga aggcaggcaa gaactgcacc agccacagga 1380 accggaacca gatctctaag gtgagctctg ggaaagagct taccgaactg caggactatg 1440 cccccgacta tcagcacaag ttcagctttg acatcatgcc caccgcacga cccaagagga 1500 agggcaagtg tgctcgcagg acccccatcc gtgcccccag tggggtgcag caggcatcct 1560 caggcacggc ccttggggcc ccactcctgg cctggatact ggggctggca gtcactctcc 1620 gctgaggacc cagggctccg tcacccagca ctgccacatg tccagcaagg aacagaattt 1680 ttttcttctt ttctttcttt ctttcttttt tttttcctaa gtggaagatc tgctgggttt 1740 caggaaaagg ctgctgaagc cttcagccac cgtctggacc cttcctggtg gattataagc 1800 ccaaaatgta cagccgtaga cgggaagggt atcacgtctc actcggctgt cctgaccgag 1860 cgcctctgga ccgtatccac tccagcacag tggtcaaagg cacgcaaagt gagtcattag 1920 tggtgtcggg acatgcgccc cttgaagaag ctgggctctg cggaagcctg gtcatttgga 1980 gagaagggct gaaggaccct gctggttttg gaaggagcag gactcagaac aaggctctcc 2040 cagagccagc tggggcaacc agcaatctca gagcactctt ggctcttgtc tgagatcact 2100 tagttaacct gccctgtcca accctatgcc accctcagtc cctatccatg ggggtaatgc 2160 ctctcattcc tgacgtctca ggcagccccc ggcagacctg ctggggtcca agaaccaatc 2220 accaaaggag agatcgccag tggatgacat ttagaactgt actcgcaatg agagtcacac 2280 agaaggtgca gttttatacc tatgtccact tatatatatc ctcactctgc ccacacaccc 2340 acataatata tatatatata taaatatata aatgcacagg tcccccaacc cactccttac 2400 caaactgtat gtcttatcat gtttataaac tatacgggaa cc 2442 //