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EBI Dbfetch

ID   AK030643; SV 1; linear; mRNA; HTC; MUS; 1667 BP.
XX
AC   AK030643;
XX
DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 13)
XX
DE   Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library,
DE   clone:5430400N11 product:CHEMOKINE RECEPTOR CCR11 homolog [Mus musculus],
DE   full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1667
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 09d904f613a438ed39ccb1964ce55fd0.
DR   Ensembl-Gn; ENSMUSG00000079355; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000076147; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=5430400N11
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FH   Key             Location/Qualifiers
FH
FT   source          1..1667
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="6 days neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="5430400N11"
FT                   /tissue_type="head"
FT                   /db_xref="taxon:10090"
FT   CDS             67..1119
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="CHEMOKINE RECEPTOR CCR11 homolog [Mus musculus]
FT                   (SPTR|Q924I3, evidence: FASTY, 99.7%ID, 100%length,
FT                   match=1050)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q924I3"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR000355"
FT                   /db_xref="InterPro:IPR005383"
FT                   /db_xref="InterPro:IPR017452"
FT                   /db_xref="MGI:MGI:2181676"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q924I3"
FT                   /protein_id="BAC27061.1"
FT                   /translation="MALELNQSAEYYYEENEMNYTHDYSQYEVICIKEEVRQFAKVFLP
FT                   AFFTMAFVTGLAGNSVVVAIYAYYKKQRTKTDVYILNLAVADLLLLITLPFWAVNAVHG
FT                   WILGKMMCKVTSALYTVNFVSGMQFLACISIDRYWAITKAPSQSGAGRPCWIICCCVWM
FT                   AAILLSIPQLVFYTVNQNARCTPIFPHHLGTSLKASIQMLEIGIGFVVPFLIMGVCYAS
FT                   TARALIKMPNIKKSRPLRVLLAVVVVFIVTQLPYNVVKFCQAIDAIYLLITSCDMSKRM
FT                   DVAIQVTESIALFHSCLNPILYVFMGASFKNYIMKVAKKYGSWRRQRQNVEEIPFDSEG
FT                   PTEPTSSFTI"
FT   polyA_signal    1647..1652
FT                   /note="putative"
FT   polyA_site      1667
FT                   /note="putative"
XX
SQ   Sequence 1667 BP; 467 A; 406 C; 385 G; 409 T; 0 other;
     agagaggtcc tctgatttcc tctgcgctcc agacggcacc tctcccagct taaacagctc        60
     ggtaccatgg ctctggagct gaaccagtca gcggaatact attatgagga gaatgagatg       120
     aactacactc acgactacag ccagtacgaa gtgatctgca taaaagaaga ggtcaggcag       180
     ttcgcaaaag tcttcctgcc tgccttcttc acaatggcct ttgtcactgg gctcgcaggg       240
     aactccgtag ttgtggcgat ttacgcctat tacaagaagc agaggaccaa gaccgatgtg       300
     tacatcctga acctggctgt agcagacttg ttacttctga tcacgctgcc tttctgggca       360
     gttaatgcag ttcacggatg gattctaggc aaaatgatgt gcaaagtaac gtcagccctg       420
     tacacggtaa actttgtctc tgggatgcag ttcctggctt gtatcagcat tgacagatat       480
     tgggcaatta ccaaagcccc cagccaatca ggagcgggga gaccctgttg gatcatctgt       540
     tgctgtgtgt ggatggccgc catcttgctg agcatacccc agctggtttt ttacacagtg       600
     aatcagaatg ctaggtgcac tcccatcttt ccccaccacc taggaacatc cctgaaagca       660
     tccattcaga tgctggaaat cggcatcggc tttgtggtcc cgtttctcat catgggcgtg       720
     tgctatgcca gtaccgccag ggcgctcatc aagatgccca acattaaaaa gtctcgcccc       780
     ctcagggttc tgctcgcggt ggtggtggtt ttcattgtca cccagctgcc ctataacgtt       840
     gttaagttct gccaagccat agatgccatc tacctgctga tcaccagctg cgatatgagc       900
     aaacgcatgg atgtcgccat ccaagtcaca gagagcatcg cgctcttcca cagctgcctc       960
     aaccccatcc tgtatgtctt catgggggcc tccttcaaaa actatatcat gaaagtggcc      1020
     aagaaatatg gatcctggag aagacagaga cagaacgtgg aagaaattcc ttttgattct      1080
     gagggtccta cagagccaac cagttctttt accatttaaa tataaaactg ctctctgcct      1140
     ctgctttttg cttagacaca cacacacaca cacacacaca cacacacaca caaagtgatg      1200
     tttcctcctc aaataaaata tttgtgttac accgagaccc aaccatcaac aaatactgtt      1260
     gttgcaattt ataacaaaga aggagtaagg ggtggggcag ggtaaggaag acagacgcca      1320
     gagagtaaac aagtgggcaa agtgtggaaa ctaaatctaa tgacaggaaa acagcttggc      1380
     aggagggaga aacaacgcat tgtgccacaa agaggaagtc tgtgtgtgtg tgtgtgtgtg      1440
     atgggagggg ggtgttttgc atcttcacca cagtggtggt tattcaaatc tgacagcaac      1500
     tgtaattctg taatataaaa ccctgggtaa tgcgtgccca cgaccatcct gtactatctc      1560
     tgtaacttcc tgtgagtaaa caacttcata ataaaaagtt aaaagaagaa acatcatgct      1620
     gtgagcctag caacctaaaa ccaattaata aagaaactta tgctagg                    1667
//


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