Dbfetch

ID   AK030513; SV 1; linear; mRNA; HTC; MUS; 2699 BP.
XX
AC   AK030513;
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DT   18-DEC-2002 (Rel. 74, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 15)
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DE   Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched
DE   library, clone:5330424D20 product:NEURAL MEMBRANE PROTEIN 35 homolog
DE   [Rattus norvegicus], full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
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RN   [1]
RP   1-2699
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA   Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA   Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA   Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA   Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA   Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA   Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA   Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA   Hayashizaki Y.;
RT   ;
RL   Submitted (16-JUL-2001) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
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RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
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RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
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RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; bfa88bcc6b66b70c4e9b7dfa2e6e122f.
DR   Ensembl-Gn; ENSMUSG00000023011; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0022333; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0022291; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0022267; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0022297; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0022065; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0022742; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0021590; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0022034; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0022161; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0022141; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0022232; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0022161; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0022757; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0021328; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0021640; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000023750; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0042551; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0042511; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0042477; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0042504; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0042238; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0042988; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0042338; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0042149; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0042305; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0042272; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0042373; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0042248; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0043031; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0041921; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0041632; mus_musculus_wsbeij.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=5330424D20
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FH   Key             Location/Qualifiers
FH
FT   source          1..2699
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="5330424D20"
FT                   /tissue_type="pituitary gland"
FT                   /db_xref="taxon:10090"
FT   CDS             95..1012
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="NEURAL MEMBRANE PROTEIN 35 homolog [Rattus
FT                   norvegicus] (SPTR|O88407, evidence: FASTY, 93.4%ID,
FT                   100%length, match=915)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8K097"
FT                   /db_xref="InterPro:IPR006214"
FT                   /db_xref="MGI:MGI:1919643"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8K097"
FT                   /protein_id="BAC26999.1"
FT                   /translation="MTQGKLSVANKAPGTEGQQHQANGEKKDAPAVPSAPPSYEEATSG
FT                   EGLKAGTFPQGPTAVPLHPSWAYVDPRHHEHFTTFSWDDQKVRRLFIRKVYTILLVQLL
FT                   VTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTI
FT                   FTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVTIFSFQTKFDFTSCQGVLFVLLMT
FT                   LFFSGLLLAVLLPFQYVPWLHAVYAVLGAGVFTLFLAFDTQLLMGNRRHSLSPEEYIFG
FT                   ALNIYLDIIYIFTFFLQLFGTNRE"
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SQ   Sequence 2699 BP; 533 A; 824 C; 701 G; 641 T; 0 other;
     gtatccacgc ggaggaaaga agagacgcag gcaggctgcg gtgacccaag cggccacccc        60
     cgcttcaggg accccttcct cgagagaaga catcatgacc cagggaaagc tctctgtggc       120
     taacaaggcc cccgggactg aggggcagca gcaccaggca aatggagaga agaaggatgc       180
     tccggcagtg ccctcggcgc caccctccta tgaggaggcc acctctggag aggggctgaa       240
     ggcagggacc ttcccccagg gcccaacagc tgtgccactc catccaagct gggcctacgt       300
     ggaccccaga catcacgagc atttcaccac cttcagctgg gatgaccaga aagttcgtcg       360
     gctcttcatc agaaaggtct ataccatcct attggtccag ctgctggtga ccttggctgt       420
     ggtggctctc tttaccttct gtgatgtcgt taaggactat gtccaggcta accccggctg       480
     gtactgggcg tcctatgccg tgttctttgc aacttacctg actctggctt gctgttctgg       540
     acccaggaga catttccctt ggaacctgat tctgctgacc atctttaccc tgtccatggc       600
     ctacctcact gggatgctgt ccagttacta caacaccaca tctgtgctgc tgtgcctggt       660
     catcacggct ctcgtctgcc tctcggtcac catcttcagt ttccagacca agtttgactt       720
     cacctcctgt cagggtgtgc tgtttgtgct gctcatgacc ctcttcttca gtggactcct       780
     cctcgctgtc ctcctgccct tccaatacgt cccctggctc cacgcggtct atgctgtact       840
     gggagcgggt gtgttcacgt tgttcctggc ctttgatacc cagttgctga tgggtaaccg       900
     tcgacactcg ctgagccccg aggagtatat ttttggagcc ctcaacatct acttagacat       960
     tatctatatc ttcaccttct tcctgcagct ttttggcacc aaccgggaat gaggagccat      1020
     ccccgccccc acccctcctc cagagaatgt cccttccctg tcctgtgacc ctctccgtgc      1080
     tcctgtgaga ccagacataa actcgctgca gccagcttgt gagcagccgc ttgctccctc      1140
     ctgcagccag ccctcacggt gtccttctgc agcttgtaca tatgccatgc ttggggccct      1200
     gcagatctga ggccatacca tcccctgcgg tgcccctggc acccaactgc atcttccaaa      1260
     tggcacagtc aaggctgagg gcacctctgg gtttgcagac ccaaggaatg agcaggagga      1320
     gcccggcagg atctcagagg tggggaggag accccaggaa acctggctgt gactgtgacc      1380
     cccaccaagt cttctagggc tccattttct ctttcagatc aaacaaccat gcttcgtaag      1440
     aaaaaaatag ccaagggggc atggctagag catgaagtca gggctctgtg gcgtagggtg      1500
     aagctgtccc cagctgtcac tcgcttagct gaaggccagt tgcttgttct agggacctgg      1560
     gaatagaatg agaataggaa gccactggtt tcgttacttg cctcagtttc ccctcctggg      1620
     tcatccaggt catagaacag gggggtgggg gcaagatgtg ctaagcatag cctgagctcc      1680
     caggggaagc tgggagggct gaactggggg ctgtcaatca aattgcatcc actggaaagg      1740
     cacatatgac catagggcta gaaccccatc tctctctctc tctctctctc tctctctctc      1800
     tctctctctc tctctctctc tctctctctc tcttccactc agtgccattc ccacaggcct      1860
     gaaggggagg tggggtagag ggcctggtgt ggaagtggtt ctgtctgctg gactagccct      1920
     taccaggggc tgtccttcag gcgcttctac atgcatttcc tgggtcttcc cctgtattct      1980
     gctgcactct gtcttacctg cagcctgaag agtagaggca tccatttccc tccccccagc      2040
     ttccctggcc actcagccca gagtccctgg gcccttgccc ccttatctcc acatctctgt      2100
     aatttggaag ctgtccagct aatggtcaca gccagggcca gtcccttgag cctatccctt      2160
     gcgatgaggc cagagctcct tatcaacctc caggctgctg ggatctcagg cagagtgtgc      2220
     gtcagccacc ctgccctggc tgactgcctg ttggagaggg gaccaggggc ccacacctgg      2280
     ggcagcatgt gggcgacaca tgcacccggc cagctctagt ccagtggaaa gttactgggt      2340
     gaaggctaca aggccctgag tggatgcagg ggaccctgtc tgccccagga aaggggacta      2400
     ggtagcccat ccattcccac ccctaccctt tcccaccctg cctactccag cctttgagaa      2460
     atattacaga agcatttgaa attttgttcc atcttggata tttgaggagg gagggtggta      2520
     tggagggaca gttggggtgg gtgctggttc aaatgagcct acttgcagca gtccagactg      2580
     gtcctgcagg gttatcggca tatccccatt tcagaagcaa agccaagtag ctccggaagg      2640
     cttggataaa cccactgtcg tctaataaac ctgagggaca gcccacagct acttcctcc       2699
//