Dbfetch
ID AK030329; SV 1; linear; mRNA; HTC; MUS; 4016 BP.
XX
AC AK030329;
XX
DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 14)
XX
DE Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN
DE full-length enriched library, clone:5031438M17 product:type 1 tumor
DE necrosis factor receptor shedding aminopeptidase regulator, full insert
DE sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-4016
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 645f4508b3beac2403707888bca8fe7c.
DR Ensembl-Gn; ENSMUSG00000021583; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0020768; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0020723; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0020697; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0020720; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0020514; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0021157; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0020032; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0020473; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0020598; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0020578; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0020671; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0020607; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0021197; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0019785; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0020089; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000169114; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0037610; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0037555; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0037522; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0037572; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0037327; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0038030; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0037282; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0037232; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0037378; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0037342; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0037496; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0037338; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0038085; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0036916; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0036727; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=5031438M17
XX
FH Key Location/Qualifiers
FH
FT source 1..4016
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="female"
FT /dev_stage="11 days pregnant adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="5031438M17"
FT /tissue_type="ovary and uterus"
FT /db_xref="taxon:10090"
FT CDS 77..2869
FT /codon_start=1
FT /transl_table=1
FT /note="putative"
FT /note="type 1 tumor necrosis factor receptor shedding
FT aminopeptidase regulator (MGD|MGI:1933403 GB|NM_030711,
FT evidence: BLASTN, 99%, match=2945)"
FT /db_xref="GOA:Q9EQH2"
FT /db_xref="InterPro:IPR001930"
FT /db_xref="InterPro:IPR014782"
FT /db_xref="InterPro:IPR024571"
FT /db_xref="InterPro:IPR033520"
FT /db_xref="InterPro:IPR034016"
FT /db_xref="InterPro:IPR042097"
FT /db_xref="MGI:MGI:1933403"
FT /db_xref="UniProtKB/Swiss-Prot:Q9EQH2"
FT /protein_id="BAC26904.1"
FT /translation="MPSLLPLVLTFLSVSSPSWCQNSDIESLKASNGDSFPWNNMRLPE
FT YMTPIHYDLMIHANLSTLTFWGKTEVEIIASRPTSTIIMHSHHLQISKATLRRGAGEML
FT SEEPLKVLEYPAHEQVALLAAQPLLAGSLYTVIIDYAANLSESFHGFYKSTYRTQEGEM
FT RILAATQFEPTAARMAFPCFDEPALKASFSIKIKRDPRHLAISNMPLVKSVNVAEGLIE
FT DHFDITVKMSTYLVAFIISDFKSVSKMTKSGVKVSVYAVPDKINQADYALDAAVTLLEF
FT YEDYFNIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESSLLYDKEKSSASSKLGITMIV
FT SHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVTVTHPELKVEDYFFGKCFNAMEV
FT DALNSSHPVSTPVENPAQIREMFDDVSYEKGACILNMLRDYLSADTFKRGIVQYLQKYS
FT YKNTKNEDLWNSMMHICPTDGTQTMDGFCSRSQHSSSTSHWRQEVVDVKTMMNTWTLQK
FT GFPLITITVSGRNVHMKQEHYMKGSERFPETGYLWHVPLTFITSKSDSVQRFLLKTKTD
FT VLILPEAVQWIKFNVGMNGYYIVHYADDGWASLSGLLKEAHTTISSNDRASLINNAFQL
FT VSIEKLSIEKALDLTLYLKNETEIMPIFQALNELIPMYKLMEKRDMIEVETQFKDFLLK
FT LLKDLIDKQTWTDEGSVSERMLRSQLLLLACVRNYQPCVQRAERYFREWKSSNGNMSIP
FT IDVTLAVFAVGAQNTEGWDFLYSKYQSSLSSTEKSQIEFSLCTSKDPEKLQWLLDQSFK
FT GEIIKTQEFPHILTLIGRNPVGYPLAWKFLRENWNKLVQKFELGSSSIAHMVMGTTDQF
FT STRARLEEVKGFFSSLKENGSQLRCVQQTIETIEENIRWMDKNFDKIRLWLQKEKPELL
FT "
FT regulatory 3997..4002
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 4016
FT /note="putative"
XX
SQ Sequence 4016 BP; 1175 A; 820 C; 861 G; 1160 T; 0 other;
gcagactggc ggctgtgatg aaggtaattt gagcaagaag atagtgtctc tgctcctcaa 60
atagccactt gcaagcatgc cctctcttct tcccctagta ttgacatttt tatctgtgtc 120
atctccttct tggtgtcaga acagtgatat agaatctcta aaagctagta atggagactc 180
attcccttgg aataatatgc gacttcctga gtatatgacc ccgattcatt atgatctcat 240
gatccatgca aacctcagca ctctgacttt ctggggaaaa acagaagtag aaatcatagc 300
tagccggccc accagcacca ttattatgca tagtcaccac ctgcaaatat ctaaggccac 360
cctcagaaga ggagctggag agatgctgtc tgaagaacca ctgaaggtcc tggaatatcc 420
tgctcatgag caagttgcac tgctggctgc ccagccgctt cttgctgggt ccctgtacac 480
agttatcatc gactatgctg ccaacctgtc tgagagtttc catggattct ataagagcac 540
ctacagaaca caggaaggtg aaatgagaat acttgcagca acacagtttg aacccacagc 600
tgctagaatg gcttttccct gctttgatga acctgccctc aaggcaagtt tttccatcaa 660
gataaagagg gatccaaggc acctggccat ctccaacatg cccctggtga aatctgtgaa 720
tgttgctgaa ggactcatag aagaccattt tgacatcact gtgaagatga gtacctacct 780
agtggccttc atcatttctg attttaagtc tgtgagcaag atgactaaga gtggagtcaa 840
ggtttctgtg tatgctgtgc cagacaagat aaatcaagcc gattatgctc tggatgctgc 900
agtgactctt ctagagtttt atgaggatta tttcaacatt ccatatcctt tacccaagca 960
agatcttgct gcaatcccag actttcagtc tggtgctatg gaaaactggg gactgaccac 1020
atacagagag tcctctctgt tatacgataa agaaaagtct tctgcatcta gtaagcttgg 1080
catcacaatg attgtgtccc atgaactggc tcaccagtgg ttcgggaacc tggtcaccat 1140
ggaatggtgg aatgaccttt ggctcaatga aggatttgcc aaatttatgg agtttgtgtc 1200
tgtcactgtg acccatcctg aactaaaagt tgaagactat ttctttggca agtgttttaa 1260
tgcaatggaa gttgatgcat taaactcctc tcaccctgta tccacacctg tggagaatcc 1320
tgcgcagatt cgggagatgt ttgatgatgt ttcttatgaa aagggagctt gtattctgaa 1380
tatgctaaga gattatctga gtgcagatac atttaaaaga ggaattgtac agtatctcca 1440
aaagtatagt tataaaaaca caaaaaacga ggacctgtgg aatagcatga tgcatatttg 1500
ccctacagat ggcacacaaa caatggatgg cttctgctct agaagccaac actcatcatc 1560
aacctcacac tggcgtcagg aggttgtaga tgtaaagacc atgatgaaca catggacact 1620
gcagaagggc tttcctctga taaccatcac tgtgagtggg cggaatgtgc acatgaagca 1680
agaacactac atgaagggtt cagaacgctt cccagagact gggtatttgt ggcatgttcc 1740
actgacattc attaccagca aatcagactc agtccagaga tttttgctga agacaaagac 1800
agatgtgctc atcctcccag aagcagtgca gtggatcaaa tttaacgtgg gaatgaatgg 1860
ctattacatt gtgcattacg cggatgatgg atgggcttct ctgagtggcc ttttaaaaga 1920
agcgcacaca acaatcagca gtaatgatcg ggcaagtctc atcaacaatg catttcagct 1980
ggtcagcatt gaaaagttat caatagaaaa agccctggat ttaaccctgt acttgaaaaa 2040
tgaaactgaa attatgccca tattccaagc tttgaatgaa ctcataccta tgtataagtt 2100
aatggagaaa agagatatga ttgaggtgga aactcaattt aaggacttcc ttctcaagtt 2160
gctgaaggac cttattgata agcagacttg gacagatgaa ggctctgtct cagagaggat 2220
gctcaggagc cagctcctcc tcctcgcatg tgtgcgcaat tatcagccct gtgtgcagag 2280
ggcagagcgc tatttcagag agtggaagtc atctaatgga aacatgagca tccctattga 2340
tgtgaccttg gctgtgtttg ctgtcggggc ccaaaacaca gaaggctggg attttcttta 2400
tagtaaatat cagtcttctt tgtctagtac tgagaaaagc caaattgaat tttccctctg 2460
tacaagcaaa gatccagaaa aacttcagtg gcttctagat caaagtttta agggagagat 2520
aataaaaact caggaatttc cacatattct cacactcatt ggcagaaacc cagtgggtta 2580
tccattggcc tggaagtttc tgagggaaaa ttggaataag cttgtacaga aatttgaact 2640
tggctcatcg tccatagctc acatggtaat gggaacaaca gaccagtttt ccaccagagc 2700
acgtcttgaa gaggtaaaag gattcttcag ttccttgaaa gaaaacggtt ctcagctccg 2760
ttgtgttcaa caaaccattg agaccattga agaaaacata cgatggatgg ataagaattt 2820
tgataaaata agactgtggc tgcaaaaaga aaagccagag ttgctgtgac aatatgtttc 2880
ttgccaagtt ccagaattta tgatgagcaa aattttgttc aatttgagta tttttaaact 2940
aaagatagtt gttttggcta ctactgaaga tattttctta tttcatttca cttgattatg 3000
tctgagaaaa gcttcaatga ctgtgattga caggtttaaa cccaagtgcc cagctccttg 3060
ccacagaaaa acccaggggg cttcttctca gtttatactt cagcttctgt gtcggccatt 3120
catcagtatt tttgtaagac tgaatagtga ggcataactg tgcagtgaat gcttggctcc 3180
ttagccatgc tgggaagtgg ctgtgcagca gccctcctgt tgacctctct ggctctacag 3240
tcctgcagtc tctcttcctg ggttcactta tgggtgctgc cttgcaggat ccacttaatc 3300
agacactttt gccctctgga ttttgttaat agtgtttggt agttgttatc catgagggat 3360
tgcatagagg tgtttatttt cttgtacttg cctctggctg gctttcaagc accgtaagtc 3420
ttactcctaa gagggggccc tttccccccc cccccccccg cactctgata actacttcct 3480
tttcatcctt tggggcatgg ggcaacagtg gaaacctgct gataccagtc atggtagtac 3540
ttgtcatttt cactgaacct acgtgcacat ttgtttttaa aaatattgta tatctataac 3600
cctcgttgga taagtcaaat atgagagcca cttactttct ttggaaggtt atttttaaaa 3660
atgcagagtg cattcagatc tgtatcagaa atatctcgtt ttaagatata cttgtgagtc 3720
actgatccct taagtaggga gtagggttgt aaattcctaa ataactcata atagcactta 3780
ctgaaaataa atcattgagg actcactaac aaaggacaat attaataata tgtttatatt 3840
agtataagga aagattcttt aaatcttaaa aagatttttt tgatgtatgg cataaatgat 3900
aggaaaaata tcaacatatg gtgctgtaat atactatgaa ataaagcgat tttaggggtt 3960
caattatatt ttcactggcc taccaaaata cttgagatta aatgaggaaa gatttc 4016
//