Dbfetch
ID AK029966; SV 1; linear; mRNA; HTC; MUS; 3707 BP.
XX
AC AK029966;
XX
DT 18-DEC-2002 (Rel. 74, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 15)
XX
DE Mus musculus adult male testis cDNA, RIKEN full-length enriched library,
DE clone:4932411G09 product:large tumor suppressor 2, full insert sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3707
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y.,
RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T.,
RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R.,
RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K.,
RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T.,
RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S.,
RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M.,
RA Hayashizaki Y.;
RT ;
RL Submitted (16-JUL-2001) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 7390aa3274a1fdb665a32fd477a1c35e.
DR Ensembl-Gn; ENSMUSG00000021959; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0021410; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0021371; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0021346; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0021374; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0021153; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0021813; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0020671; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0021120; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0021241; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0021222; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0021316; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0021250; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0021837; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0020414; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0020723; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000022531; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0039701; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0039672; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0039625; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0039672; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0039409; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0040146; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0039409; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0039328; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0039473; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0039443; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0039561; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0039431; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0040180; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0039022; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0038804; mus_musculus_wsbeij.
XX
CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=4932411G09
XX
FH Key Location/Qualifiers
FH
FT source 1..3707
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /sex="male"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="4932411G09"
FT /tissue_type="testis"
FT /db_xref="taxon:10090"
FT CDS 397..3540
FT /codon_start=1
FT /transl_table=1
FT /note="large tumor suppressor 2 (MGD|MGI:1354386
FT GB|NM_015771, evidence: BLASTN, 99%, match=3444)"
FT /note="putative"
FT /db_xref="GOA:Q7TSJ6"
FT /db_xref="InterPro:IPR000719"
FT /db_xref="InterPro:IPR000961"
FT /db_xref="InterPro:IPR008271"
FT /db_xref="InterPro:IPR009060"
FT /db_xref="InterPro:IPR011009"
FT /db_xref="InterPro:IPR015940"
FT /db_xref="InterPro:IPR017441"
FT /db_xref="InterPro:IPR017892"
FT /db_xref="InterPro:IPR028742"
FT /db_xref="MGI:MGI:1354386"
FT /db_xref="PDB:2COS"
FT /db_xref="UniProtKB/Swiss-Prot:Q7TSJ6"
FT /protein_id="BAC26704.1"
FT /translation="MRPKTFPATTYSGNSRQRLQEIREGLKQPSKASTQGLLVGPNSDT
FT SLDAKVLGSKDASRQQQMRATPKFGPYQKALREIRYSLLPFANESGTSAAAEVNRQMLQ
FT ELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMGYLDPRNEQIVRVIKQTSPGKGLAP
FT TPVTRRPSFEGTGEALPSYHQLGGANYEGPAALEEMPRQYLDFLFPGAGAGTHGAQAHQ
FT HPPKGYSTAVEPSAHFPGTHYGRGHLLSEQPGYGVQRSSSFQNKTPPDAYSSMAKARGG
FT PPASLTFPAHAGLYTASHHKPAATPPGAHPLHVLGTRGPTFTGESSAQAVLAPSRNSLN
FT ADLYELGSTVPWSAAPLARRDSLQKQGLEASRPHVAFRAGPSRTNSFNNPQPEPSLPAP
FT NTVTAVTAAHILHPVKSVRVLRPEPQTAVGPSHPAWVAAPTAPATESLETKEGSAGPHP
FT LDVDYGGSERRCPPPPYPKHLLLPSKSEQYSVDLDSLCTSVQQSLRGGTEQDRSDKSHK
FT GAKGDKAGRDKKQIQTSPVPVRKNSRDEEKRKSRIKSYSPYAFKFFMEQHVENVIKTYQ
FT QKVSRRLQLEQEMAKAGLCEAEQEQMRKILYQKESNYNRLKRAKMDKSMFVKIKTLGIG
FT AFGEVCLACKLDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQ
FT DKDSLYFVMDYIPGGDMMSLLIRMEVFPEHLARFYIAELTLAIESVHKMGFIHRDIKPD
FT NILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGNHMRQDSMEPGDLWDDVSNCRCGDRL
FT KTLEQRAQKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPF
FT LAPTPTETQLKVINWESTLHIPTQVRLSAEARDLITKLCCAADCRLGRDGADDLKAHPF
FT FNTIDFSRDIRKQPAPYVPTISHPMDTSNFDPVDEESPWQRGPAERAPRPGTRWPPPAA
FT SIQSTPSMSSPSAGSSMTTAIPSGARSPQSPQRVQSPGDADLEGAAEGLPAGVRVSLS"
FT regulatory 3683..3688
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 3707
FT /note="putative"
XX
SQ Sequence 3707 BP; 890 A; 1082 C; 1053 G; 682 T; 0 other;
ggcgcttcgg aaccgcggcg tgagcgcccc gggaagatgg agccgccgcc gccagcgccg 60
ccgccgcttc cccgggctcc cccgaccctg ccggggtcag caaccactgc cgccaccggc 120
gcccggtctc ccggcgcgcg aggtcccgga gccgcgggcc aggacgccgc cgagggtgta 180
gagcgctccc ggagagagtg atggtcttca aaatgaaaac tctggaaaat tttaggttct 240
ctttaggaac tacaaaaatt gaaggacagc aattttttga aaggaagttg ttctgaaagc 300
atgtttacaa ttcactgaca ctgttgactg ttctctttaa aataataaga cgctttgaga 360
agattgtatt tatggtaaaa ggaaactgga ctaacaatga ggccaaagac ttttcctgcc 420
acaacttact ctggaaatag ccggcagcga ttgcaagaga ttcgagaggg gctgaagcag 480
ccatccaagg cttccaccca ggggctgctg gtgggaccaa acagtgacac ttccctggat 540
gccaaagtcc tggggagcaa agatgcctcc aggcagcagc aaatgagagc caccccgaag 600
tttggacctt atcaaaaagc tctcagggaa atccgatatt ccctcctgcc ttttgccaac 660
gagtcaggca cttcggcagc tgcagaggtg aaccggcaga tgcttcagga gttggtgaat 720
gcgggatgtg accaggagat ggctggcaga gcgctcaagc agacgggcag taggagtatc 780
gaagctgcct tggagtacat cagtaagatg ggctacctgg accccaggaa tgagcagatt 840
gtgcgagtca tcaagcagac ctccccagga aagggcctgg cgcccacccc ggtgactcgg 900
cggcccagtt tcgagggcac aggggaagca ctcccatcct accaccagct gggtggtgca 960
aactacgagg gccccgccgc actggaggag atgccgcggc aatatttaga ctttctcttc 1020
cctggagccg gagccggcac ccacggtgcc caggctcacc agcatcctcc caaagggtac 1080
agcacagcag tagagccaag tgcgcacttt ccgggcacac actatggtcg tggtcatcta 1140
ctatcggagc agcctgggta tggggtgcag cgcagttcct ccttccagaa caagacgcca 1200
ccagatgcct attccagcat ggccaaggcc cggggtggcc ctcccgccag cctcaccttt 1260
cctgcccatg ctgggctgta cactgcctcg caccacaagc cggcggctac cccacctggg 1320
gcccacccat tacatgtgtt gggcacccgg ggtcccacgt ttactggcga aagctctgca 1380
caggctgtgc tggcaccgtc caggaacagc ctcaatgctg acttgtacga gctgggctcc 1440
acggtgccct ggtctgcagc tccactggca cgccgcgact cgctgcagaa gcagggtcta 1500
gaagcctcgc ggccgcatgt ggcttttcgg gctggcccca gcaggaccaa ctccttcaac 1560
aacccacaac ctgagccctc actgcccgcc cccaacacgg tcaccgccgt gacggccgca 1620
cacatccttc accctgtgaa gagcgtgcgt gtgctgcggc ccgagcccca gacagccgtg 1680
gggccctcgc accccgcctg ggtggctgcg cccacagcac ctgccactga gagcctggag 1740
acgaaggagg gcagcgcagg cccacacccg ctggatgtgg actatggcgg ctccgagcgc 1800
aggtgcccac cgcctccgta cccaaagcac ttgctgctgc ccagtaagtc tgagcagtac 1860
agcgtggacc tggacagcct gtgcaccagt gtgcagcaga gtctgcgagg gggcactgag 1920
caagacagga gtgacaagag ccacaaaggt gcgaagggag acaaagctgg cagagacaaa 1980
aagcagattc agacctcccc ggtgcctgtc cgcaagaata gcagagatga agagaagaga 2040
aagtctcgca tcaagagtta ctccccttat gccttcaaat tcttcatgga gcaacacgtg 2100
gagaatgtca tcaaaaccta ccagcagaag gtcagccgga ggctacagct ggagcaggaa 2160
atggccaaag ctgggctctg tgaggccgag caggagcaga tgaggaagat cctctaccag 2220
aaggagtcta actacaaccg gctgaagagg gccaagatgg acaagtccat gtttgtgaaa 2280
atcaagactc taggcatcgg tgcctttggg gaagtgtgcc tcgcttgtaa gctggacact 2340
cacgctctgt acgccatgaa gactctcagg aagaaggatg tcctgaaccg gaatcaagtg 2400
gcccatgtca aggctgagag ggacatcctg gctgaagcag acaatgagtg ggtggtcaaa 2460
ctctactact ccttccagga caaggacagc ctgtactttg tgatggacta cataccaggc 2520
ggggatatga tgagcctgct gatcaggatg gaggtcttcc ctgagcacct ggcccgcttc 2580
tacattgcag agttgaccct ggccattgaa agtgtccaca agatgggctt tatccaccgg 2640
gacatcaagc ctgacaacat actcatcgac ctggatggtc atattaagct gacagatttt 2700
ggcctctgca ctggattcag gtggactcac aattccaagt actaccagaa agggaaccac 2760
atgagacagg acagcatgga gcccggtgac ctctgggacg atgtttccaa ctgtcgctgt 2820
ggagacaggt taaagaccct ggagcagagg gcgcagaagc agcaccagag gtgcctggca 2880
cattctcttg tcgggacacc aaattacatc gctccggagg tgcttctccg caaagggtac 2940
acgcagctct gtgactggtg gagcgtcggt gtgattctct ttgagatgct ggttgggcag 3000
ccgcctttct tggcccccac ccccacagag acgcagctga aggtgatcaa ctgggagagc 3060
acgctgcata tccctacgca ggtgaggctc agcgctgagg cccgagacct catcacgaag 3120
ctgtgctgcg cggctgactg ccgcctgggc agggatgggg cagatgacct caaggcacac 3180
ccgttcttca acaccatcga cttttcccgt gacatccgaa agcagcctgc accctacgtc 3240
cccaccatca gccaccccat ggacacctcc aattttgacc cggtggatga agaaagcccc 3300
tggcagcgag ggccagcgga gagagcgcca aggcctggga cacgctggcc tcccccagca 3360
gcaagcatcc agagcacgcc ttctatgagt tcaccttccg caggttcttc gatgacaacg 3420
gctatccctt ccggtgcccg aagccctcag agcccgcaga gagtgcagag cccaggggat 3480
gcggacttgg aaggtgcggc cgaggggctg ccagccggtg tacgtgtaag cctcagttaa 3540
ccacaactcg aggaaaccca aaatgagatt tcttttcaga agacaaactc aagcttagga 3600
atccttcatt tttagttctg gtaaatgggc aacaggaaga gtcaacatga tttcaaatta 3660
gccctctgag gaccttcact gcattaaaac agtattttta aaaaatt 3707
//