Dbfetch
ID AK029526; SV 1; linear; mRNA; HTC; MUS; 1475 BP. XX AC AK029526; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus adult male testis cDNA, RIKEN full-length enriched library, DE clone:4921513M21 product:lectin, galactose binding, soluble 8, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1475 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 0eb36cf0da1b1169e5a037a5fda95a20. DR Ensembl-Gn; ENSMUSG00000057554; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0020231; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0020187; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0020162; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0020170; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0019974; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_CBAJ_G0019941; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0020058; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0020043; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_NODShiLtJ_G0020079; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0020645; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0019275; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0019572; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000099820; mus_musculus. DR Ensembl-Tr; ENSMUST00000099821; mus_musculus. DR Ensembl-Tr; ENSMUST00000124888; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0036309; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0036232; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0036203; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0036235; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0035999; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_CBAJ_T0035910; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0036055; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0036036; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_NODShiLtJ_T0036043; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0036755; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0035610; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0035447; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=4921513M21 XX FH Key Location/Qualifiers FH FT source 1..1475 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="4921513M21" FT /tissue_type="testis" FT /db_xref="taxon:10090" FT CDS 462..1412 FT /codon_start=1 FT /transl_table=1 FT /note="lectin, galactose binding, soluble 8 FT (MGD|MGI:1928481 GB|NM_018886, evidence: BLASTN, 100%, FT match=1086)" FT /note="putative" FT /db_xref="GOA:Q9JL15" FT /db_xref="InterPro:IPR001079" FT /db_xref="InterPro:IPR013320" FT /db_xref="InterPro:IPR030638" FT /db_xref="MGI:MGI:1928481" FT /db_xref="UniProtKB/Swiss-Prot:Q9JL15" FT /protein_id="BAC26495.1" FT /translation="MLSLNNLQNIIYNPIIPYVGTITEQLKPGSLIVIRGHVPKDSERF FT QVDFQLGNSLKPRADVAFHFNPRFKRSSCIVCNTLTQEKWGWEEITYDMPFRKEKSFEI FT VFMVLKNKFQVAVNGRHVLLYAHRISPEQIDTVGIYGKVNIHSIGFRFSSDLQSMETSA FT LGLTQINRENIQKPGKLQLSLPFEARLNASMGPGRTVVIKGEVNTNARSFNVDLVAGKT FT RDIALHLNPRLNVKAFVRNSFLQDAWGEEERNITCFPFSSGMYFEMIIYCDVREFKVAI FT NGVHSLEYKHRFKDLSSIDTLSVDGDIRLLDVRSW" XX SQ Sequence 1475 BP; 424 A; 359 C; 373 G; 319 T; 0 other; gagcccaaac attaagacgt gggacatgaa acctgtagaa cataagaggg ctggaactac 60 aggggtgcac cccgaccgat ttgggcagag ctgggtggaa atcaacctgg gggcttccag 120 cacgtgaggt gagccacacc ccaaccccag ccagccactc ccacagccag ccataggtct 180 gcgtgtgtga cattaagagc ccaacagccc cagctcgcag cactcggacg ccccgcccct 240 gcagtcgttc tcgcggaaac ggccgcgggc tgaccccgcc ctctgcctgt ggcggctccg 300 ggaaccggac ggcgtccgtc aggggacaca agtcggagca aagcgcttac taccaccggg 360 gacaagtttt tactttgagt aatccttaaa tgaagagtgg gtaaagtgtg tatacggaag 420 agagactcca atcaacaata tcaataagtt gaaaaagaaa aatgttgtcc ttaaataacc 480 tacaaaatat catctataac ccgataatcc cctatgttgg caccattact gagcaattga 540 agcctggctc tctgattgta atccgtgggc atgtccctaa agattcagaa agattccagg 600 ttgactttca gctgggcaac agcctgaagc caagagcaga cgtggccttc cactttaacc 660 ctcggttcaa aaggtctagc tgcattgttt gtaacacact gacacaggag aagtggggct 720 gggaggagat cacctacgac atgcccttca gaaaagaaaa gtcctttgag atcgtgttca 780 tggtgctcaa gaacaaattc caggtggctg tgaacggaag gcatgttctg ctgtacgccc 840 acaggatcag cccggagcag atcgacacag tgggcatcta cggcaaagtg aacatccact 900 ccatcgggtt cagattcagc tcggatttac agagtatgga aacatctgct ctgggactga 960 cacagataaa cagagagaat atacaaaagc caggcaagct ccagctgagc ctgccatttg 1020 aagcaaggtt gaatgcctcc atgggtcctg gacgaaccgt tgtcattaaa ggggaagtga 1080 acaccaatgc ccgaagcttt aatgttgacc tagtggcagg aaaaacaagg gatatcgctc 1140 tgcacttgaa cccacgcctc aatgtgaaag catttgtaag aaattccttt cttcaggatg 1200 cctggggaga agaggagaga aatattacct gcttcccatt tagttctggg atgtactttg 1260 agatgataat ctactgtgat gtccgggaat tcaaggttgc tataaatggt gtgcacagcc 1320 tggagtacaa acacagattt aaagacctaa gcagtattga tacactatca gtcgatggtg 1380 atatccgttt gctggatgta aggagctggt agctaccatg actgccaaaa cccccgaaat 1440 acaaaatggc ttatccggta ctggccatgt caaat 1475 //