ID AK017578; SV 1; linear; mRNA; HTC; MUS; 1369 BP.
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AC AK017578;
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DT 09-FEB-2001 (Rel. 66, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 21)
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DE Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched
DE library, clone:5730419M14 product:neurexin I, full insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-1369
RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T.,
RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T.,
RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K.,
RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y.,
RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A.,
RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C.,
RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K.,
RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M.,
RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T.,
RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (10-JUL-2000) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
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RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
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RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
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RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
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RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
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RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR MD5; af2d466af85ccc0764e772ae75a7fe98.
DR Ensembl-Gn; ENSMUSG00000024109; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0024115; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0024075; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0024044; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0024076; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0023841; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0024521; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0023320; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0023814; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0023943; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0023909; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0024027; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0023937; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0024566; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0023065; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0023386; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000054059; mus_musculus.
DR Ensembl-Tr; ENSMUST00000072671; mus_musculus.
DR Ensembl-Tr; ENSMUST00000160844; mus_musculus.
DR Ensembl-Tr; ENSMUST00000161402; mus_musculus.
DR Ensembl-Tr; ENSMUST00000174331; mus_musculus.
DR Ensembl-Tr; ENSMUST00000197268; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0048807; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0048784; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0048744; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0048746; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0048489; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0049238; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0048570; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0048416; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0048518; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0048487; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0048635; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0048491; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0049338; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0048169; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0047792; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=5730419M14
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FH Key Location/Qualifiers
FH
FT source 1..1369
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /dev_stage="8 days embryo"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="5730419M14"
FT /tissue_type="whole body"
FT /db_xref="taxon:10090"
FT CDS <1..1172
FT /codon_start=3
FT /transl_table=1
FT /note="neurexin I (MGD|MGI:1096391 GB|AJ006802, evidence:
FT BLASTN, 100%, match=129)"
FT /note="putative"
FT /note="start codon is not identified"
FT /db_xref="GOA:Q9CS84"
FT /db_xref="InterPro:IPR000152"
FT /db_xref="InterPro:IPR000742"
FT /db_xref="InterPro:IPR001791"
FT /db_xref="InterPro:IPR003585"
FT /db_xref="InterPro:IPR013320"
FT /db_xref="InterPro:IPR027789"
FT /db_xref="InterPro:IPR037440"
FT /db_xref="MGI:MGI:1096391"
FT /db_xref="PDB:3BOD"
FT /db_xref="PDB:3MW2"
FT /db_xref="UniProtKB/Swiss-Prot:Q9CS84"
FT /protein_id="BAB30815.1"
FT /translation="CNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEA
FT VLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG
FT NATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQAT
FT IIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTA
FT TAMQSEMSTSIMETTTTLATSTARRGKPPTKEPISQTTDDILVASAECPSDDEDIDPCE
FT PSSGGLANPTRVGGREPYPGSAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNR
FT DEGSYHVDESRNYISNSAQSNGAVVKEKQPSSAKSANKNKKNKDKEYYV"
XX
SQ Sequence 1369 BP; 417 A; 322 C; 342 G; 288 T; 0 other;
tctgcaatga ccctgggaca acatatatct ttagcaaagg tggtggacag attacatata 60
agtggcctcc caatgaccgc cccagtacac gagcagacag gctggccatc ggatttagca 120
ctgtccagaa ggaagccgtg ttggtgcgtg tggacagttc ctcaggactg ggtgactacc 180
tggagctgca catacaccaa ggaaaaattg gagttaagtt taatgttggg acagatgaca 240
tcgccatcga agagtctaat gcaatcatta atgatgggaa ataccatgta gtacgtttca 300
caaggagtgg tggcaatgcc acgttacagg tggacagctg gccagttatc gaacgctacc 360
ctgcaggaaa caatgataac gagcgcctgg cgattgctag acagcgaatt ccatatcgac 420
ttggtcgagt agttgatgaa tggctactcg acaaagggcg tcagctcaca atcttcaata 480
gccaagcaac cataataatt ggcgggaaag agcagggcca gcccttccag ggccagctct 540
ctggtcttta ctacaatggc ttgaaagttc tgaatatggc agcagagaac gatgccaaca 600
tcgccatagt ggggaatgtg aggctggtcg gtgaagtgcc ttcctctatg acaactgagt 660
cgacagccac tgccatgcag tctgagatgt ccacctcaat catggagacc accacaaccc 720
tggctaccag cacagctaga agaggcaagc cccccacaaa ggaacccatc agccagacca 780
cagatgacat ccttgtggcc tcggcagagt gtcccagtga cgatgaggac attgacccct 840
gtgagccgag ctcaggtggg ttagccaacc ccaccagagt aggtggccgt gaaccatacc 900
caggctctgc agaggtgatt cgggagtcca gcagtaccac tggcatggtg gtggggattg 960
tcgcagcagc cgctctgtgc atcctcatcc tcctctatgc catgtacaag tacaggaacc 1020
gggatgaagg gtcgtaccac gtggatgaga gtcgaaacta catcagtaac tcagcacagt 1080
ccaatggggc tgtggtcaag gagaagcaac ccagcagtgc taaaagcgcc aacaaaaaca 1140
agaaaaacaa ggataaggag tattacgtct gatatcaaga tttgaaacgg acacttgtat 1200
agaaatagtc ttcattttat ctgagacata atataaactt ttactttcct ttttatgaag 1260
cacatacaaa agaagacagg gaatgcgatc aggagggaaa actcttttta aaaaaaaaaa 1320
caaacaagta tctcatgctc ttgtttctca aaagaaaaaa aaaacatac 1369
//
