Dbfetch
ID AK013476; SV 1; linear; mRNA; HTC; MUS; 2050 BP. XX AC AK013476; XX DT 08-FEB-2001 (Rel. 66, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 20) XX DE Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched DE library, clone:2900002L20 product:NEURAL MEMBRANE PROTEIN 35 homolog DE [Rattus norvegicus], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2050 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 64910c7671464666c31d520f890dda9c. DR Ensembl-Gn; ENSMUSG00000023011; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022333; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022291; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022267; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022297; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022065; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0022742; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0021590; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022034; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022161; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022141; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022232; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022161; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0022757; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021328; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0021640; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023750; mus_musculus. DR Ensembl-Tr; ENSMUST00000231171; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0042551; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0042511; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0042477; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0042504; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0042238; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0042988; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0042338; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0042149; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0042305; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0042272; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0042373; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0042248; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0043031; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0041921; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0041632; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=2900002L20 XX FH Key Location/Qualifiers FH FT source 1..2050 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="2900002L20" FT /tissue_type="hippocampus" FT /db_xref="taxon:10090" FT CDS 11..928 FT /codon_start=1 FT /transl_table=1 FT /note="NEURAL MEMBRANE PROTEIN 35 homolog [Rattus FT norvegicus] (SPTR|O88407, evidence: FASTY, 93.4%ID, FT 100%length, match=915)" FT /note="putative" FT /db_xref="GOA:Q8K097" FT /db_xref="InterPro:IPR006214" FT /db_xref="MGI:MGI:1919643" FT /db_xref="UniProtKB/Swiss-Prot:Q8K097" FT /protein_id="BAB28874.1" FT /translation="MTQGKLSVANKAPGTEGQQHQANGEKKDAPAVPSAPPSYEEATSG FT EGLKAGTFPQGPTAVPLHPSWAYVDPRHHEHFTTFSWDDQKVRRLFIRKVYTILLVQLL FT VTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTI FT FTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVTIFSFQTKFDFTSCQGVLFVLLMT FT LFFSGLLLAVLLPFQYVPWLHAVYAVLGAGVFTLFLAFDTQLLMGNRRHSLSPEEYIFG FT ALNIYLDIIYIFTFFLQLFGTNRE" XX SQ Sequence 2050 BP; 399 A; 644 C; 519 G; 488 T; 0 other; agaagacatc atgacccagg gaaagctctc tgtggctaac aaggcccccg ggactgaggg 60 gcagcagcac caggcaaatg gagagaagaa ggatgctccg gcagtgccct cggcgccacc 120 ctcctatgag gaggccacct ctggagaggg gctgaaggca gggaccttcc cccagggccc 180 aacagctgtg ccactccatc caagctgggc ctacgtggac cccagacatc acgagcattt 240 caccaccttc agctgggatg accagaaagt tcgtcggctc ttcatcagaa aggtctatac 300 catcctattg gtccagctgc tggtgacctt ggctgtggtg gctctcttta ccttctgtga 360 tgtcgttaag gactatgtcc aggctaaccc cggctggtac tgggcgtcct atgccgtgtt 420 ctttgcaact tacctgactc tggcttgctg ttctggaccc aggagacatt tcccttggaa 480 cctgattctg ctgaccatct ttaccctgtc catggcctac ctcactggga tgctgtccag 540 ttactacaac accacatctg tgctgctgtg cctggtcatc acggctctcg tctgcctctc 600 ggtcaccatc ttcagtttcc agaccaagtt tgacttcacc tcctgtcagg gtgtgctgtt 660 tgtgctgctc atgaccctct tcttcagtgg actcctcctc gctgtcctcc tgcccttcca 720 atacgtcccc tggctccacg cggtctatgc tgtactggga gcgggtgtgt tcacgttgtt 780 cctggccttt gatacccagt tgctgatggg taaccgtcga cactcgctga gccccgagga 840 gtatattttt ggagccctca acatctactt agacattatc tatatcttca ccttcttcct 900 gcagcttttt ggcaccaacc gggaatgagg agccatcccc gcccccaccc ctcctccaga 960 gaatgtccct tccctgtcct gtgaccctct ccgtgctcct gtgagaccag acataaactc 1020 gctgcagcca gcttgtgagc agccgcttgc tccctcctgc agccagccct cacggtgtcc 1080 ttctgcagct tgtacatatg ccatgcttgg ggccctgcag atctgaggcc ataccatccc 1140 ctgcggtgcc cctggcaccc aactgcatct tccaaatggc acagtcaagg ctgagggcac 1200 ctctgggttt gcagacccaa ggaatgagca ggaggagccc ggcaggatct cagaggtggg 1260 gaggagaccc caggaaacct ggctgtgact gtgaccccca ccaagtcttc tagggctcca 1320 ttttctcttt cagatcaaac aaccatgctt cgtaagaaaa aaatagccaa gggggcatgg 1380 ctagagcatg aagtcagggc tctgtggcgt agggtgaagc tgtccccagc tgtcactcgc 1440 ttagctgaag gccagttgct tgttctaggg acctgggaat agaatgagaa taggaagcca 1500 ctggtttcgt tacttgcctc agtttcccct cctgggtctt cccctgtatt ctgctgcact 1560 ctgtcttacc tgcagcctga agagtagagg catccatttc cctccgccca gcttccctgg 1620 ccactcagcc cagagtccct gggcccttgc ccccttatct ccacatctct gtaatttgga 1680 agctgtccag ctaatggtca cagccagggc cagtcccttg agcctatccc ttgcgatgag 1740 gccagagctc cttatcaacc tccaggctgc tgggatctca ggcagagtgt gcgtcagcca 1800 ccctgccctg gctgactgcc tgttggagag gggaccaggg gcccacacct ggggcagcat 1860 gtgggcgaca catgcacccg gccagctcta gtccagtgga aagttactgg gtgaaggcta 1920 caaggccctg agtggatgca ggggaccctg tctgccccag gaaaggggac taggtagccc 1980 atccattccc acccctaccc tttcccaccg tgcctactcc agcctttgag aaatattaca 2040 gaagcatttt 2050 //