Dbfetch
ID AK008700; SV 1; linear; mRNA; HTC; MUS; 3071 BP. XX AC AK008700; XX DT 08-FEB-2001 (Rel. 66, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 20) XX DE Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, DE clone:2210010L24 product:solute carrier family 39 (iron-regulated DE transporter), member 1, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3071 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; a7da28ee5b9e6b18d35c2ede32c2b478. DR Ensembl-Gn; ENSMUSG00000025993; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0015996; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0015980; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0015935; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0015934; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0015767; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0016387; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0015349; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0015739; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0015840; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0015842; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0015910; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0015862; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0016434; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015133; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0015410; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000027137; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0019694; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0019671; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0019628; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0019620; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0019449; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0020119; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0018956; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0019403; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0019517; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0019523; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0019605; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0019493; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0020173; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0018713; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0019044; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=2210010L24 XX FH Key Location/Qualifiers FH FT source 1..3071 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="2210010L24" FT /tissue_type="stomach" FT /db_xref="taxon:10090" FT CDS 136..1848 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="solute carrier family 39 (iron-regulated FT transporter), member 1 (MGD|MGI:1315204 GB|NM_016917, FT evidence: BLASTN, 98%, match=3071)" FT /db_xref="GOA:Q9JHI9" FT /db_xref="InterPro:IPR009716" FT /db_xref="InterPro:IPR036259" FT /db_xref="MGI:MGI:1315204" FT /db_xref="UniProtKB/Swiss-Prot:Q9JHI9" FT /protein_id="BAB25840.1" FT /translation="MTKARDQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFA FT VSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVI FT LCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDWIVVVA FT GENRSRLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYFL FT LWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELECEQE FT PTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGS FT ILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLD FT LSVSPFEDIRSRFVNVEPVSPTTKIPETVFTTEMHMSNMSNVHEMSTKPIPIVSVSLLF FT AGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPE FT AFGLLVLISVSFVAMGHLMYFRFAQKTLGNQIFVCGPDEKEVTDENQPNTSVV" XX SQ Sequence 3071 BP; 819 A; 647 C; 682 G; 923 T; 0 other; gggtctttcg gcataaggct gttgtgctta tactggtgct atcttcggtt cctctcactc 60 ctgtgaacaa gctcccgggc aagagcagct aaagctacca gcatcagaac aaacaagggg 120 agaacgcctg gtgtcatgac caaggcaaga gatcaaaccc atcaggaagg atgctgtgga 180 tccttagcaa actacctgac ctcagcaaaa ttcctcctct accttggcca ctctctctcc 240 acttgggggg atcggatgtg gcactttgca gtgtctgtgt ttctggtgga actctatgga 300 aacagccttc tcttgacagc tgtctatgga ctggtggtgg caggctctgt tctggtcctg 360 ggagccatca ttggtgactg ggtggataag aatgccagac ttaaagtggc ccagacgtca 420 ctggtggttc agaatgtgtc cgtcatcctc tgcggaatca tcctgatgat ggttttccta 480 cacaagaatg agctcctgac catgtaccat ggatgggtcc ttactgtctg ctacatcctg 540 atcatcacta ttgcaaacat tgcaaatttg gccagtactg ccactgcgat cacaatccaa 600 agggactgga ttgttgttgt ggcaggagaa aacaggagca gattagcaga catgaatgct 660 accattagaa ggattgacca gctaaccaac atcctggccc ccatggctgt cgggcagatt 720 atgacatttg gttctccagt cattggctgt ggttttattt ccggttggaa tttggtgtcc 780 atgtgtgtgg agtacttctt gctctggaag gtttaccaga agacccctgc tctggctgta 840 aaagctgctc tcaaggtaga ggagtcagaa ctgaagcagc tgacctcacc taaagatact 900 gagccaaaac ctttggaggg aactcatcta atgggtgaga aagactccaa catccgtgaa 960 cttgaatgtg aacaagagcc cacctgtgcc tcccagatgg cagagccctt ccgcactttc 1020 cgagatggat gggtctccta ctataaccag ccagtgtttc tggctggcat gggcctggct 1080 ttcctctata tgacagtcct gggctttgac tgtatcacta cagggtacgc ctacactcag 1140 gggctgagtg gatccatcct tagtattttg atgggagcat cagcaataac tggaataatg 1200 ggaactgtgg ccttcacctg gctacgtcga aaatgtggcc ttgttcggac tggtctattc 1260 tcaggactag cccagctttc ctgtttaatc ttgtgtgtga tctccgtatt catgcctgga 1320 agccccttgg acctgtctgt ttctccattt gaagatatcc gttctaggtt tgtgaatgtg 1380 gagccagtgt ccccaactac caaaatacct gagaccgtct ttacaacaga aatgcatatg 1440 tccaacatgt ctaatgtcca tgagatgagt actaaaccca tccccatagt ctctgtcagc 1500 ctgctgtttg caggagtcat tgctgctaga atcggtcttt ggtcctttga tttgacggtg 1560 acacagttgc tgcaagaaaa tgtaattgaa tctgaaagag gcattatcaa tggtgtgcag 1620 aactccatga actaccttct tgaccttctg catttcatca tggtcatctt ggccccaaat 1680 cctgaagctt ttggcttgct ggtattgatt tcagtctcct ttgtggcaat gggacatctt 1740 atgtatttcc gatttgccca gaagactctg ggcaaccaga tttttgtttg tggtcctgat 1800 gaaaaagaag ttacagatga aaatcaaccg aatacatctg ttgtataaaa atagtttagc 1860 tgtggcccct gttactagat tgtggagagc atgtgtgctt attttgtact gcagaatccc 1920 aataaatgcc tgcatttctc tctggtttta ccacatctgt gccttaaggg ctaggagcac 1980 taactaacca tcgccagcaa agatggttat ttctccttac atgtaaacat tggaaaatag 2040 gaagagggag aggcagtcag cgtgtgtata ggaagggttt aatggtaaaa tgaacttccc 2100 ttactcttat gagtatatta aattttaaag agtggttgtc aggtgagtaa aattattcct 2160 tagcagatat ttattatcta ctggaatgat aaatcaattc accctaaaac tcactcttgt 2220 aaaactctgc tccacttcct ttttttaaga tcagtgatat ttttctcagt tacattacag 2280 aaacaagttt ttcctccatg tatgaaggtt atagttagat aatgaatgtt atccttatta 2340 atcccattga acttaaggaa tttattgtat gtggaggatg aaatgtgtaa ctagacttgt 2400 ccaaaaggtt catggaataa cttttgcatt ttgaccatca gaaagggcaa aatattacag 2460 taatgtgtgt atggtggctc ttcataaaat gactctcaaa atctgcagaa agaagaaaag 2520 ttgtaggttt ctagtgtggt acagaaggac ttaaagcttg ttattagtgt gattgtagaa 2580 actggaagct aagggtgagg acctcatgta accagagtca ctgtcatcag ccatcactaa 2640 ctattttggt aaatgagaga actgacctgg caccttacaa gcagaaaagc ggcccacact 2700 aagaaaggac tgcaaatcag tgagtctgta tagaacattt taccttcact gacttgggcc 2760 gatgtgtttg tcatctctgt gtttttctag agcaagaata gtcacaaaag ttcccctttc 2820 aatatccctg agaagaataa agaaaaaact gtttgtaaat atttttttaa aactgttctg 2880 caagtctttt tgtaacatgc agtaccaaca tgggacattg ccttaacttt tgatgcactt 2940 tcatggagac tgactgccat gcattgctgt gagcactttc tttgtcgttc agtttaatct 3000 tttccttcac ctttattaca gtatgacata atgatctact atgttgtcaa agcttcataa 3060 aatatttcta t 3071 //