Dbfetch
ID AJ543321; SV 1; linear; mRNA; STD; MUS; 4486 BP.
XX
AC AJ543321;
XX
DT 01-APR-2003 (Rel. 75, Created)
DT 21-OCT-2008 (Rel. 97, Last updated, Version 4)
XX
DE Mus musculus mRNA for NrCAM protein, splice variant 1
XX
KW Alternative splicing; NrCAM gene; NrCAM protein.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-4486
RA Dirks P.;
RT ;
RL Submitted (06-FEB-2003) to the INSDC.
RL Dirks P., Neurogenetik, Leibniz-Institut, Brenneckestr. 6, 39118 Magdeburg,
RL GERMANY.
XX
RN [2]
RA Dirks P., Montag-Sallaz M., Montag D.;
RT "Expression patterns of L1-family cell recognition molecules L1, CHL1,
RT NrCAM,and neurofascin in the mouse brain";
RL Unpublished.
XX
DR MD5; 8497651f423d88539b5a5c14285eb877.
DR Ensembl-Gn; ENSMUSG00000020598; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0019712; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0019676; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0019647; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0019654; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0019458; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0020101; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0019011; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0019430; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0019543; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0019532; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0019613; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0019568; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0020141; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0018778; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0019061; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000020939; mus_musculus.
DR Ensembl-Tr; ENSMUST00000110748; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0034773; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0034698; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0034682; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0034696; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0034476; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0035195; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0034398; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0034390; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0034533; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0034524; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0034672; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0034534; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0035243; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0034079; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0033940; mus_musculus_wsbeij.
DR EuropePMC; PMC4138338; 25143608.
XX
FH Key Location/Qualifiers
FH
FT source 1..4486
FT /organism="Mus musculus"
FT /strain="swiss webster"
FT /mol_type="mRNA"
FT /dev_stage="adult"
FT /clone_lib="OriGene MAB-1001"
FT /tissue_type="brain"
FT /db_xref="taxon:10090"
FT CDS 460..4215
FT /gene="NrCAM"
FT /product="NrCAM protein"
FT /db_xref="GOA:Q810U4"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003598"
FT /db_xref="InterPro:IPR003599"
FT /db_xref="InterPro:IPR003961"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR013098"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR026966"
FT /db_xref="InterPro:IPR036116"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="MGI:MGI:104750"
FT /db_xref="UniProtKB/Swiss-Prot:Q810U4"
FT /protein_id="CAD65848.1"
FT /translation="MPKKKHLSAGGVPLILFLCQMISALDVPLDLVQPPTITQQSPKDY
FT IIDPRENIVIQCEAKGKPPPSFSWTRNGTHFDIDKDPLVTMKPGSGTLVINIMSEGKAE
FT TYEGVYQCTARNERGAAVSNNIVVRPSRSPLWTKERLEPIVLQNGQSLVLPCRPPIGLP
FT PAIIFWMDNSFQRLPQSERVSQGLNGDLYFSNVLPEDTREDYICYARFNHTQTIQQKQP
FT ISLKVISVDELNDTIAANLSDTEFYGAKSSKERPPTFLTPEGNESHKEELRGNVLSLEC
FT IAEGLPTPIIYWIKEDGMLPANRTFYRNFKKTLQITHVSEADSGNYQCIAKNALGAVHH
FT TISVTVKAAPYWIVAPQNLVLSPGENGTLICRANGNPKPRISWLTNGVPIEIALDDPSR
FT KIDGDTIIFSNVQESSSAVYQCNASNKYGYLLANAFVNVLAEPPRILTSANTLYQVIAN
FT RPALLDCAFFGSPMPTIEWFKGTKGSALHEDIYVLHDNGTLEIPVAQKDSTGTYTCVAR
FT NKLGMAKNEVHLEIKDPTRIIKQPEYAVVQRGSKVSFECRVKHDHTLIPTIMWLKDNGE
FT LPNDERFSTDKDHLVVSDVKDDDGGTYTCTANTTLDSASASAVLRVVAPTPTPAPIYDV
FT PNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHDAGLWRHQAEVSGTQT
FT TAQLKLSPYVNYSFRVMAENSIGRSMPSEASEQYLTKAAEPDQNPMAVEGLGTEPDNLV
FT ITWKPLNGFQSNGPGLQYKVSWRQKDGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQA
FT LNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEVHWDPVPPKSVRGHLQGYR
FT IYYWKTQSSSKRNRRHIEKKILTFQGTKTHGMLPGLQPYSHYALNVRVVNGKGEGPAST
FT DRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILQYQPINSTHELGP
FT LVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPGSQITEEAITTVDEAGIPPPDVG
FT AGKGKEEWRKEIVNGSRSFFGLKGLMPGTAYKVRVGAEGDSGFVSSEDVFETGPAMASR
FT QVDIATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDD
FT GTFGEYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSG
FT KKEKEPAEGNESSEAPSPVNAMNSFV"
XX
SQ Sequence 4486 BP; 1316 A; 1049 C; 1082 G; 1039 T; 0 other;
gcacgagggc agctggaggc gacagcttcg gaagcttcgg aaacacgcac gacagctggg 60
ctccggggtc ttaggcagta gcgccccggc agggaggtgg gcgcggcacg aaaacgaatt 120
tttgtgctgc tctccagtga aagccagtac ccctatttgc tgaaggcttt ttaaccaagg 180
ctgctttcag ctcttgacat tacccagaaa aaggtggact cagaaatcag ggaagcattg 240
gaggtttctg accctgagga tcttctgaag agcaatgcta agaaaacctt tggcttaagg 300
aattaaaacg aaataccact tcttcaagta agaagaccta cttcaaagtc ccctgcatga 360
aaaattattt aaacgccgca caccaatctt ccgtgagaga agaaaaggaa attccgtgcg 420
tgggtctcag caggagtgca gctgatgcag cttaaaataa tgccgaagaa gaagcactta 480
tctgcaggcg gagtgcccct gattctcttc ctgtgccaga tgatcagcgc gctggatgtt 540
cctctcgatc tggtacaacc tccaaccatc actcaacagt caccaaaaga ctacatcatt 600
gaccctcggg agaatattgt aatccagtgt gaggccaaag ggaaacctcc cccaagcttt 660
tcctggactc gtaatggaac tcactttgac atagacaagg accctctggt caccatgaag 720
cctggctcag gaacccttgt catcaacatc atgagtgagg ggaaggcaga gacctatgaa 780
ggagtctacc agtgcactgc aaggaacgag cgtggagctg ccgtctccaa taacattgtt 840
gtccgcccat ctaggtcacc cttgtggacc aaggaaagac ttgaacctat agtactccag 900
aatgggcagt cattagtact tccatgtagg cctccgattg gattacctcc ggccataata 960
ttttggatgg ataattcctt tcagagactt ccacagagtg agcgggtttc ccaaggccta 1020
aatggagacc tttacttctc caatgtcctc ccagaggaca cccgtgagga ctatatctgc 1080
tatgccagat ttaatcacac tcaaaccatc cagcagaagc agcctatttc tttgaaggtg 1140
atttcagtgg atgaattgaa tgacactata gctgctaatt tgagtgacac tgagttttat 1200
ggtgctaaat ctagtaaaga gaggccccca acgtttctaa ctccagaggg caatgaaagc 1260
cacaaagagg aattaagagg aaacgtgctt tcgctggagt gcattgcgga aggcctacct 1320
actccaatta tttactggat caaagaagac ggaatgcttc ccgccaaccg gacattttat 1380
cggaacttta agaaaaccct gcagatcact catgtttccg aagccgactc tggaaattat 1440
cagtgcatag caaaaaacgc attaggagcc gtccatcaca ccatttctgt cactgttaaa 1500
gcggctccct actggatcgt ggcacctcaa aacctcgtgc tttccccggg agagaatggg 1560
accctcatct gcagagctaa tggcaacccg aaacccagaa ttagctggtt aacaaatgga 1620
gtcccaatag aaattgctct cgatgacccc agcagaaaaa tagatggcga taccattata 1680
ttttcaaatg ttcaagaaag ctcaagtgcg gtttatcagt gcaatgcctc taacaaatat 1740
ggatatttac tagcaaatgc atttgtaaat gttctcgctg aaccacctcg gattctcaca 1800
tcagcaaaca cactgtacca ggtcattgca aacaggcctg ctttgctaga ttgtgccttc 1860
tttggatctc ctatgcctac cattgagtgg tttaaaggca ctaaaggaag cgctcttcat 1920
gaagacattt atgttttgca tgataatgga acattagaaa ttcccgtggc ccaaaaggat 1980
agtacaggga cgtatacttg tgtcgcacgg aataaactag ggatggcaaa gaatgaagtt 2040
cacttggaaa tcaaagatcc aaccaggatc attaaacaac ctgagtatgc agtcgtccag 2100
agggggagca aggtgtcctt tgaatgcaga gtgaaacatg accacacctt aatccccacc 2160
attatgtggc tgaaggacaa tggagagctg cccaatgatg aaaggttctc cactgacaag 2220
gatcatctgg tggtatctga tgtaaaggat gacgatggcg gaacctacac gtgtacggcc 2280
aacacaacgc tggacagtgc ttcggccagc gctgtgctca gggttgtcgc tcctactcca 2340
actccagccc ccatttacga tgtcccgaat cctccctttg atttagaatt gaccaatcaa 2400
cttgacaaaa gtgttcagct gacatggacc ccaggcgacg acaacaatag ccccattaca 2460
aaattcatca ttgagtatga agatgcaatg catgatgcag ggctgtggcg ccaccaggct 2520
gaagtttctg gaacacagac cacagcccaa ctgaagctgt ctccctatgt gaactactcc 2580
ttccgtgtca tggcagagaa cagcattggg agaagtatgc cgagcgaggc atccgagcag 2640
tatcttacaa aagccgcaga accagatcag aatcccatgg ctgtggaagg actagggaca 2700
gagccggaca acttggtgat tacatggaag cccctgaatg gttttcaatc gaatgggcct 2760
ggcctccagt acaaagtgag ctggcgccag aaagatggtg acgatgagtg gacgtctgtg 2820
gttgtggcca atgtatccaa atacattgtt tctggcacac caacctttgt cccatacctg 2880
ataaaagttc aagctctgaa tgatgtgggg tttgcaccag agccagctgc agtcatgggg 2940
cattctggag aagaccttcc aatggtggct cctggaaatg ttcgcgtcag cgtggtgaac 3000
agtacgctgg cagaggtgca ctgggaccca gttcctccca agagtgtccg aggacactta 3060
caaggctacc ggatttacta ctggaagacc cagagctcct ctaaaagaaa caggcgccac 3120
attgagaaga agatcctcac cttccagggc accaagactc acggcatgct gccagggctg 3180
cagccataca gtcactatgc cctcaacgtc cgagtggtca acgggaaagg ggagggccca 3240
gccagcacgg acagaggctt ccatacaccg gagggagtcc ctagtgctcc ctcatctttg 3300
aaaattgtta atcccacact ggactccctc actttggaat gggacccccc aagccaccca 3360
aatggcatcc tgactgagta catcttacaa tatcagccaa ttaacagcac acatgagcta 3420
ggccctctgg tagatttaaa aattcctgcc aacaagaccc gctggacttt gaaaaattta 3480
aatttcagca ctcggtacaa gttctatttc tatgcacaga catcagtggg gccaggcagt 3540
cagatcacag aggaagcgat aacgactgtg gacgaagctg gtattcctcc acctgatgta 3600
ggtgcaggca aaggcaaaga agaatggagg aaagaaattg taaatggttc tcgaagcttc 3660
tttgggttaa agggtctaat gccaggaaca gcatacaaag ttcgagttgg tgctgagggg 3720
gactctggtt ttgtgagttc agaggatgtg tttgagacag gaccagcaat ggcaagccgg 3780
caagtggata tcgcgaccca aggctggttc ataggtctaa tgtgcgctgt tgctctcctc 3840
atcttaattt tgctgattgt ttgcttcatc agaagaaaca aaggtggtaa atacccagtt 3900
aaagaaaagg aggatgctca tgcagaccct gaaatccagc ccatgaagga agatgatggg 3960
acgtttggag aatacagtga tgcagaagat cacaagcctt tgaaaaaagg aagtcgaaca 4020
ccttcagaca ggactgtgaa aaaagaagat agcgatgata gtctggttga ctatggagag 4080
ggggtgaacg gccaattcaa cgaggatggc tcctttattg gccaatacag tggtaagaaa 4140
gagaaagagc cagcagaggg aaatgaaagc tcagaggccc cttctcctgt caacgcaatg 4200
aactcctttg tttaagtctt taagctctgt gccaatgtct aatctctctg gaatggtttt 4260
cctgaacacc tgtcatccct ctcatactac ggacatatgg gtagaaagaa tgttttctgc 4320
ggtatatgag tattatgaga ccagagcaag aacatgactc agtcaaatga tacattaata 4380
tgaactgggg tgcaaagtgc atacgttttt gttcagagtg gggtttttct caatttcctt 4440
ggaactgatt aaaaagaaat acaacatcaa aaaaaaaaaa aaaaaa 4486
//