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EBI Dbfetch

ID   AJ420921; SV 1; linear; genomic DNA; STD; MUS; 1906 BP.
XX
AC   AJ420921;
XX
DT   20-AUG-2002 (Rel. 72, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Mus musculus partial PPARb/d gene for peroxisome proliferator activated
DE   receptor beta/delta, exon 3 (and joined CDS)
XX
KW   peroxisome proliferator activated receptor beta; PPARb/d gene.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1906
RA   Larsen L.K.;
RT   ;
RL   Submitted (12-SEP-2001) to the INSDC.
RL   Larsen L.K., Basic, Center for clinical and basic research, Ballerup Byvej
RL   222, DK-2750 Ballerup, DENMARK.
XX
RN   [2]
RX   PUBMED; 12059785.
RA   Larsen L.K., Amri E.Z., Mandrup S., Pacot C., Kristiansen K.;
RT   "Genomic organization of the mouse peroxisome proliferator-activated
RT   receptor beta/delta gene: alternative promoter usage and splicing yield
RT   transcripts exhibiting differential translational efficiency";
RL   Biochem. J. 366(Pt 3):767-775(2002).
XX
DR   MD5; c771d71cbf3b3c2c07e9c709fca60b47.
DR   Ensembl-Gn; ENSMUSG00000002250; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000002320; mus_musculus.
XX
CC   Related sequences: AJ420918 - AJ420922
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1906
FT                   /organism="Mus musculus"
FT                   /strain="C57 Bl/6J"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10090"
FT   intron          <1..1282
FT                   /gene="PPARb/d"
FT                   /number=2
FT   exon            1283..1489
FT                   /gene="PPARb/d"
FT                   /number=3
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   CDS             join(1363..1489,AJ420922.1:182..336,AJ420922.1:1928..2066,
FT                   AJ420922.1:3119..3321,AJ420922.1:3426..3876,
FT                   AJ420922.1:4444..4691)
FT                   /gene="PPARb/d"
FT                   /product="peroxisome proliferator activated receptor
FT                   beta/delta"
FT                   /function="nuclear hormone receptor"
FT                   /db_xref="GOA:Q546I3"
FT                   /db_xref="InterPro:IPR000536"
FT                   /db_xref="InterPro:IPR001628"
FT                   /db_xref="InterPro:IPR001723"
FT                   /db_xref="InterPro:IPR003074"
FT                   /db_xref="InterPro:IPR003075"
FT                   /db_xref="InterPro:IPR008946"
FT                   /db_xref="InterPro:IPR013088"
FT                   /db_xref="MGI:MGI:101884"
FT                   /db_xref="UniProtKB/TrEMBL:Q546I3"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAD44517.1"
FT                   /translation="MEQPQEETPEAREEEKEEVAMGDGAPELNGGPEHTLPSSSCADLS
FT                   QNSSPSSLLDQLQMGCDGASGGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMK
FT                   LEYEKCDRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTASE
FT                   GCQHNPQLADLKAFSKHIYNAYLKNFNMTKKKARSILTGKSSHNAPFVIHDIETLWQAE
FT                   KGLVWKQLVNGLPPYNEISVHVFYRCQSTTVETVRELTEFAKNIPNFSSLFLNDQVTLL
FT                   KYGVHEAIFAMLASIVNKDGLLVANGSGFVTHEFLRSLRKPFSDIIEPKFEFAVKFNAL
FT                   ELDDSDLALFIAAIILCGDRPGLMNVPQVEAIQDTILRALEFHLQVNHPDSQYLFPKLL
FT                   QKMADLRQLVTEHAQMMQWLKKTESETLLHPLLQEIYKDMY"
FT   intron          1490..>1906
FT                   /gene="PPARb/d"
FT                   /number=3
XX
SQ   Sequence 1906 BP; 426 A; 516 C; 545 G; 419 T; 0 other;
     cctgggctac ataaagagat cttatttcac aaaacaaaca aaaaaaaaat aaatctcata        60
     catgtacact cgaaagagtg tgcacacaca cagtcagtgt ctctgtctgc ctgtctgtct       120
     gtctgtctgt ctgtctctct ctctctctct ctctctctct ctctccaaac ctagccattg       180
     aggagagcca ggtgccatgg ggccttggtg atcagataga tagattcagg tcctgaatga       240
     agctgggctt cctgggcaaa gggtgtttct gtttgcatgg gatgcctttg agctgcctgt       300
     gggacgtgca taaggagggg accacgctgg agctcaggct ctgaacaggg ctcccctgag       360
     ctttgagaag ctgaagctgc actcttgcta ttctctgctg ggtgagccct ccacagccct       420
     cccccacccc accccacccg tagttgtcac tctgagaaca ggatttatgg gcagtttttt       480
     atttgatgaa ccttggagta gcatcagggt tactactgct gaaatgagac acggtgacca       540
     gatgcaacct ggggaggaaa gggtttattc agctaatatt tccatatcct gctcatcaga       600
     ggaagtcagg gcaggaacct ggaggcagga gctgatgtag aggccatgga gggtgctcag       660
     cctgctttct tatagaaccc aggaccagcc cagggatggc accatctacc aggggctggg       720
     ccctccccca tcaatcatta attaagaaaa tgcccttcag ctggatctta tggaggcatt       780
     ttctcaattg aggtgccctc ctttcagact ccagactgtg tcaagttgac ataaaactag       840
     gcagtgccca gcccctcctg gaacaatccc gggaggacaa gctggctctg cagtctgtgg       900
     cagccagcac agtgggagcg ccgagctgtt ctctaccctc ctacctcagg caggacagac       960
     cactcctcag aacagcggtt ctggacagct gcgtcctgag ccatgggctg ggtggggggt      1020
     gggctgcctt gagtaccaat cccccgggtg atcgctcaca ccagtgttcc agcactgaga      1080
     gcaaagggac aggaggttga ggtcatcttt ggccgcatgg ccaattcagt ccatcctggg      1140
     ctttataaag ctctgtctcc agaaaccaga aactgcaggc actgagaggg gcacaggagc      1200
     agcactgctg tgtgacagtg gccctgcagg gtgcctgtgc ccaccacctt ttccctgacc      1260
     atctctgtct ctccctgccc aggcagtcca tctgcgctca gacccagatg gtggcagagc      1320
     tatgaccagg cctgcaggcg ccacgccaag tgggggtcag tcatggaaca gccacaggag      1380
     gagacccctg aggcccggga agaggagaaa gaggaagtgg ccatgggtga cggagccccg      1440
     gagctcaatg ggggaccaga acacacgctt ccttccagca gctgtgcagg tatggagggg      1500
     gctgagccgg gcggtggggg ttcaggtttc tgtgaacaac gtggggtgcc aagaagtaga      1560
     gtgactgatg ctagagcctg gggccatgct ggtcactagc cagtgagccg aggggccctg      1620
     ggaaatcaca tacaggagtg taggtgagct gtacatgagc ttttctggga ggtgggaagg      1680
     tgttggtccc ttatcctacc cctgcccatc agatgtctct ggccccacat gtgcacctgc      1740
     acacgtttgg taacaaacag gctttggtgc cagagcctgt gcatgagata gccttgtgtg      1800
     gacagacacc acccctggga tgcacccata gtccaagctg cactcggtgt catggaccac      1860
     cggacccggg agacctggta ctaaccctgt gctccgctat gtttga                     1906
//


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