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EBI Dbfetch

ID   AJ243933; SV 1; linear; mRNA; STD; MUS; 2781 BP.
XX
AC   AJ243933;
XX
DT   01-MAY-2000 (Rel. 63, Created)
DT   23-SEP-2008 (Rel. 97, Last updated, Version 5)
XX
DE   Mus musculus mRNA for cone photoreceptor cyclic nucleotide-gated channel
DE   alpha-subunit
XX
KW   CNG3 gene; cyclic nucleotide-gated channel alpha-subunit.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
OG   Plasmid pNC-2
XX
RN   [1]
RP   1-2781
RA   Hirano A.A.;
RT   ;
RL   Submitted (16-JUL-1999) to the INSDC.
RL   Hirano A.A., Neuroanatomie, Max-Planck-Institut fuer Hirnforschung,
RL   Deutschordenstrasse 46, D-60528 Frankfurt a.M., GERMANY.
XX
RN   [2]
RX   DOI; 10.1002/(SICI)1096-9861(20000522)421:1<80::AID-CNE5>3.0.CO;2-O.
RX   PUBMED; 10813773.
RA   Hirano A.A., Hack I., Waessle H., Duvoisin R.M.;
RT   "Cloning and immunocytochemical localization of a cyclic nucleotide-gated
RT   channel alpha-subunit to all cone photoreceptors in the mouse retina";
RL   J. Comp. Neurol. 421(1):80-94(2000).
XX
DR   MD5; 886cf21bfc4add8d9e0f664e853b12bd.
DR   Ensembl-Gn; ENSMUSG00000026114; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000027288; mus_musculus.
DR   EuropePMC; PMC1226059; 11536077.
DR   EuropePMC; PMC1735666; 14757870.
DR   EuropePMC; PMC2833090; 10813773.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2781
FT                   /organism="Mus musculus"
FT                   /plasmid="pNC-2"
FT                   /strain="C57BL"
FT                   /mol_type="mRNA"
FT                   /dev_stage="adult"
FT                   /tissue_type="retina"
FT                   /db_xref="taxon:10090"
FT   CDS             380..2275
FT                   /gene="CNG3"
FT                   /product="cyclic nucleotide-gated channel alpha-subunit"
FT                   /function="phototransduction in cone photoreceptors"
FT                   /db_xref="GOA:Q9JJZ8"
FT                   /db_xref="InterPro:IPR000595"
FT                   /db_xref="InterPro:IPR005821"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="InterPro:IPR018488"
FT                   /db_xref="InterPro:IPR018490"
FT                   /db_xref="MGI:MGI:1341818"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9JJZ8"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAB89685.1"
FT                   /translation="MAKVNTQCSQPSPTQLSIKNADRDLDHVENGLGRVSRLIISIRAW
FT                   ASRHLHDEDQTPDSFLDRFHGSELKEVSTRESNAQPNPGEQKPPDGGEGRKEEPIVVDP
FT                   SSNIYCRWLTAIALPVFYNWCLLVCRACFDELQSEHLTLWLVLDYSADVLYVLDMLVRA
FT                   RTGFLEQGLMVRDTKRLWKHYTKTLHFKLDILSLIPTDLAYLKLGVNYPELRFNRLLKF
FT                   SRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIHWNACIYFAISKFIGFGTDSWVYPNT
FT                   SKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGILIFATIVGNV
FT                   GSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLK
FT                   NLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGR
FT                   EMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDL
FT                   FCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDVEEKVEYLES
FT                   SLDILQTRFARLLAEYSASQMKLKQRLTRLESQMNRRCCGFSPDRENSEDASKTD"
XX
SQ   Sequence 2781 BP; 672 A; 707 C; 743 G; 659 T; 0 other;
     actagtgatt atgcactccc tcttgtcttc cacccccttc tccacaccca atccaccctt        60
     gaccacctca ggctgccaat ctactggcta ctctgggctg ggactgtgga gctaggaagt       120
     gggaaaagct gatccaggtt ttgttttgtt ttgttttgtt ttgttttgtt ttgttttgtt       180
     ttgtttttct catcatctcc ctctctgatg ctgttgggac tttgatcttc agaagcaagc       240
     gtcttcctag gcacggcttg cctccttcaa gaaggagact taagcagagc ggtgtggagt       300
     ctgcagcctt cgataagcag gcattggtga aacagcctca cagcaggcca ccccggggct       360
     gaatgtgacc tgtgcagaga tggcaaaggt gaacacccag tgttcacagc cctccccgac       420
     ccaactttca ataaagaatg cggacagaga tctcgaccac gtagagaacg gcctgggcag       480
     ggtgtcacgc ctcatcatct cgattcgtgc gtgggcctcc aggcacttac acgatgaaga       540
     ccagacacct gactcctttt tggatcgatt tcatggatct gagcttaagg aagtctccac       600
     ccgggaaagc aatgcccagc ccaacccagg agaacagaag ccaccagacg gaggggaagg       660
     caggaaggag gagcccattg tggtggaccc ctccagcaac atctactgcc gctggctgac       720
     tgccatcgcg ctcccagtct tctataactg gtgtctactt gtatgcaggg cctgttttga       780
     tgagctacaa tcagagcacc tgacgctgtg gctggtcttg gactactctg cagatgtcct       840
     ttatgtttta gacatgctgg ttcgagcccg gacaggtttc cttgagcaag gcctaatggt       900
     cagagatacc aagaggctgt ggaaacatta cacaaagacc ttgcacttca agctggacat       960
     cctgtctctc atccccacag acctggctta tttaaagttg ggcgtgaact acccagaact      1020
     gaggttcaac cgcctcctga agttctctcg gctctttgaa ttctttgacc gcacagagac      1080
     aaggaccaac taccccaacg tgttcaggat agggaacttg gtcctttaca cactcatcat      1140
     catccactgg aatgcctgca tctactttgc catttccaag ttcattggtt ttgggacaga      1200
     ctcctgggtc tatccaaaca cctccaagcc ggagtatgca cgactctccc ggaagtacat      1260
     ttacagtctc tactggtcca ccctgaccct gaccaccatt ggtgagaccc caccccccgt      1320
     gaaagatgaa gagtatctct ttgtggtcat cgacttcctg gtgggtatcc tgatctttgc      1380
     caccatagtg ggcaacgtag gctccatgat ttccaacatg aacgctcccc gggtagagtt      1440
     ccaggctaag atcgactccg tcaagcagta catgcagttc cggaaggtaa ccaaggactt      1500
     ggagactcgg gttatccggt ggtttgacta tctgtgggcc aacaggaaga cggtggatga      1560
     aaaggaagtg ctcaaaaacc tcccggacaa gctgaaggct gagatcgcca tcaacgtgca      1620
     cctggacacg ctgaagaagg tccgaatctt ccaggactgc gaggcggggc tgctggtgga      1680
     gctggtgctg aagctccgcc ccactgtgtt cagccccggg gactacatat gcaaaaaggg      1740
     ggacattgga agagagatgt acatcatcaa ggagggcaag ctggctgtgg tggctgatga      1800
     cggggtcacc cagtttgtgg tcctcagtga cggcagttac tttggggaga ttagcatctt      1860
     aaacattaag gggagcaagt ctgggaaccg caggacggcc aacatcagga gtatcggcta      1920
     ctcagacctg ttctgcctct ccaaggatga cctaatggaa gccctcaccg agtacccaga      1980
     cgctaagagg gctctggagg aaaagggccg tcagattctg atgaaggaca acctaattga      2040
     tgaggaccta gtcgcggcca gggtagatac cagggacgtt gaggagaagg tggagtacct      2100
     ggagtcgtcc ctggacatcc tgcagacgag gtttgcccga ctcctggctg agtacagtgc      2160
     ctcccagatg aagctgaaac agcggctcac tcggctggag agccagatga acaggaggtg      2220
     ttgtggcttc tcacctgaca gggagaattc cgaggatgct tcaaagactg actgaaaatg      2280
     caggtggctc tgcctcctgc tccccccccc cccccccggg gccagctctc tgggcgacac      2340
     tatatagcct cggggtaaag ggtttggctg tggtttcgcc tcagtgctac tcatcctttg      2400
     ggagtggtgt gacagcaagg aagagcctta gtttcctctc ctatgaaatg ggactcatgg      2460
     ctgtcggccc cagaagttcc agactatcat gaggtggcga aggttgtggc tttggaaagc      2520
     gtgaagagtt cccaacccag tgtataagca tatgtgcaca tgattctaat gttgttagtt      2580
     atgttggcat atgggtatgt tcagttgtcg gcggaggtca ggagagggcg ttgcatcccc      2640
     tgggctggag ttacctgctg ttgtaagcta ccagcatggg tgctgggatc ctgtcttcat      2700
     tagggttact attgctgtga tgaaatatca taaccaatgc aagttaaaaa aaaaaaaaaa      2760
     aaaaaaaaaa aaaaaaaaaa a                                                2781
//


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