Dbfetch

ID   AF124599; SV 1; linear; genomic DNA; STD; MUS; 6108 BP.
XX
AC   AF124599;
XX
DT   27-MAY-1999 (Rel. 59, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Mus musculus lysosomal pepstatin-insensitive protease (Cln2) gene, complete
DE   cds.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-6108
RX   DOI; 10.1007/s003359901160.
RX   PUBMED; 10556422.
RA   Katz M.L., Liu P.C., Grob-Nunn S.E., Shibuya H., Johnson G.S.;
RT   "Characterization and chromosomal mapping of a mouse ortholog of the
RT   late-infantile ceroid-lipofuscinosis gene CLN2";
RL   Mamm. Genome 10(11):1050-1053(1999).
XX
RN   [2]
RP   1-6108
RA   Katz M.L., Liu P.-C., Grob S.E., Shibuya H., Johnson G.S.;
RT   ;
RL   Submitted (29-JAN-1999) to the INSDC.
RL   Veterinary Pathobiology, University of Missouri-Columbia, 209A Connaway
RL   Hall, Columbia, MO 65211, USA
XX
DR   MD5; 3de5d78e2fdc3f6498005cfa42873da2.
DR   Ensembl-Gn; ENSMUSG00000030894; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0032764; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0032744; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0032677; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0032750; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0032459; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0033255; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0031789; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0032433; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0032586; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0032539; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0032677; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0032571; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0033276; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0031502; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0031906; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000033184; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0085705; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0085775; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0085721; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0085744; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0085302; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0086245; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0085822; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0085246; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0085441; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0085293; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0085484; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0085335; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0086531; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0085235; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0084359; mus_musculus_wsbeij.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6108
FT                   /organism="Mus musculus"
FT                   /chromosome="7"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10090"
FT   mRNA            join(<3..19,137..208,461..600,1860..2010,2203..2330,
FT                   2478..2653,2765..2963,3117..3305,3537..3606,4408..4528,
FT                   4642..4800,5119..5244,5415..>5555)
FT                   /gene="Cln2"
FT                   /product="lysosomal pepstatin-insensitive protease"
FT   CDS             join(3..19,137..208,461..600,1860..2010,2203..2330,
FT                   2478..2653,2765..2963,3117..3305,3537..3606,4408..4528,
FT                   4642..4800,5119..5244,5415..5555)
FT                   /codon_start=1
FT                   /gene="Cln2"
FT                   /product="lysosomal pepstatin-insensitive protease"
FT                   /db_xref="GOA:O89023"
FT                   /db_xref="InterPro:IPR000209"
FT                   /db_xref="InterPro:IPR009020"
FT                   /db_xref="InterPro:IPR015366"
FT                   /db_xref="InterPro:IPR030400"
FT                   /db_xref="MGI:MGI:1336194"
FT                   /db_xref="UniProtKB/Swiss-Prot:O89023"
FT                   /protein_id="AAD32573.1"
FT                   /translation="MGLQARLLGLLALVIAGKCTYNPEPDQRWMLPPGWVSLGRVDPEE
FT                   ELSLTFALKQRNLERLSELVQAVSDPSSPQYGKYLTLEDVAELVQPSPLTLLTVQKWLS
FT                   AAGARNCDSVTTQDFLTCWLSVRQAELLLPGAEFHRYVGGPTKTHVIRSPHPYQLPQAL
FT                   APHVDFVGGLHRFPPSSPRQRPEPQQVGTVSLHLGVTPSVLRQRYNLTAKDVGSGTTNN
FT                   SQACAQFLEQYFHNSDLTEFMRLFGGSFTHQASVAKVVGKQGRGRAGIEASLDVEYLMS
FT                   AGANISTWVYSSPGRHEAQEPFLQWLLLLSNESSLPHVHTVSYGDDEDSLSSIYIQRVN
FT                   TEFMKAAARGLTLLFASGDTGAGCWSVSGRHKFRPSFPASSPYVTTVGGTSFKNPFLIT
FT                   DEVVDYISGGGFSNVFPRPPYQEEAVAQFLKSSSHLPPSSYFNASGRAYPDVAALSDGY
FT                   WVVSNMVPIPWVSGTSASTPVFGGILSLINEHRILNGRPPLGFLNPRLYQQHGTGLFDV
FT                   THGCHESCLNEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP"
XX
SQ   Sequence 6108 BP; 1492 A; 1616 C; 1357 G; 1643 T; 0 other;
     aaatgggact ccaagcccgg tgagaaactg aggtggggag ggtagctaag ggggattaca        60
     ttagagggat tacatgttgt agaaggagta caatgagggt tcggctcctg atgaaaccca       120
     cctgctgtcc ctgcagcctc ctagggctcc ttgctctcgt catcgccggc aaatgcactt       180
     acaaccctga gccggaccag cggtggatgt gagttgattt agtactacag gtgcctgtct       240
     ctgcagacgc ttggtcctag ctttcctcat cctcaactgc tcctagtacc cactctgtag       300
     ccttattcga caccccctcg gcttaatctc tggtcattta tctcctatga tccttatctg       360
     catctaggat tcgacccaaa gtctcagttc ttaatcccaa actttccatg atctggattt       420
     ctcgttatgg cctaatcaaa tcatgtccct gaccctgtag gctgcctcca ggctgggtgt       480
     ccctgggccg cgtggatccc gaggaagagc tgagtctcac ttttgcgctg aaacagcgga       540
     acctggaaag actctcggag ctggtgcagg ctgtgtcgga tcctagctct cctcaatatg       600
     gtgcctatca gttggggcag gaagtgggag gcaggaccag gcaggcactg gtggtgcaga       660
     tcatgctagg gccatgtttc tggtatgaca gacaaatgac aataactgcc atattcatac       720
     acacacacac acacacacac acacacacac acacacacca aaatttccac ctgagttctt       780
     cagtcttaaa actaagaaca aatctaagcc tagtagcatg aggtaataat cctagctact       840
     tggactaaaa caggacgatt ttgaatccaa ggcatgcctg ggcagtgtag caatattgtc       900
     aacattaaaa ccaatttttt ttagaggcct agctagctca ttgatagggt gggtgcttac       960
     ggagcatatg aaaaacccta ggttcaagtg ccaggaagat ggtgggtgtg gggtagctag      1020
     ctgtgtttaa gaacacatga ttcataatca gatctagatt gaaatgttca cttaccctac      1080
     cagctctcaa atggaggact agcacttagt gtgtgtgcat gatcaagtca tggaccttac      1140
     cccactctca tagccactgc cacaccctcc tctgttgcta gttcaagtcc taaattgtct      1200
     ttggattaat ccactctggc cattcctctt gctaccaact cagttgttta ttctctttct      1260
     ggattactgc ccagtacccg gactggtttg aagcttcctc tccttcaccc cactccccag      1320
     aacagtccct tctctattct agagtattct ctatggtgct caggctggag tgaatccttc      1380
     ccctgcttaa agtcctgtat ggtgaggcaa gggtgtgtgt gtgtgtgtgt gtgtgtagaa      1440
     tggaggcgag aggagggggg ggcatcctta gagcacccaa gaagctcctc atatgcagga      1500
     aagaatgact caccgttatg ttgtttaaaa tcaacaagga tgaagagctg agctaaatta      1560
     gaaggttctg tataactggc tccaaaagtt tggggaaatc tttttgaaga taagcttaaa      1620
     atgggatatt gaaagtttac taacgtcctt gagtttttgt gaccatggta acacatgctg      1680
     tgcatttttc ctggccatga cgtttcatgt ctctcgagcc ttttcttccc tttgactctc      1740
     actatgccta gccctacaca gtcctcctcg ggaagttttg atgtcctctg attgaggtcc      1800
     agacagacaa cccaggaaag cctcaaatga ggacgagagc ctcttctgaa tccctgcagg      1860
     aaagtaccta accctggagg atgtagctga gctggttcaa ccatcacccc tgaccctcct      1920
     cactgtccaa aagtggctct cagcagctgg agcccggaac tgcgattcag tgaccaccca      1980
     ggactttctg acttgctggc tgagtgtccg gtgagaagta atgatttccc catagaatcc      2040
     attgtcccta caaggagaca aaatacccca attgggggag tttaaagcgt gctgggagcc      2100
     tgtgggtata ggtaatgcat acggaaatga tggcaggctg ctaagtgggg ctcaggccaa      2160
     ctcttctact ccttcccatg gtttctgttt tcttacttcc agacaggctg agctgctgct      2220
     cccaggagct gagtttcatc gctatgtagg gggacctaca aagacccatg ttataaggtc      2280
     cccacatccc taccagcttc cccaggcctt ggcccctcat gtggattttg gtaaacccaa      2340
     tggagttggt ggaagttgtg ggagggaggt ctacaggctg aagaatttta gatgccaaaa      2400
     gaggcataga atctttccag tagagaagtg ggtggtagtg tctgtaagac ctccttaagc      2460
     ctgacccctt tccacagtgg gggggctgca ccgtttcccc ccttcatctc caagacaacg      2520
     tccagaacca caacaggtag gaactgttag cctgcacttg ggagtgactc cgtctgtgct      2580
     ccgtcagcga tacaacctga cagccaaaga tgtgggctca ggcaccacca acaatagcca      2640
     ggcctgtgcc caggtgagcc atgtaaagcc ctgcggtcat cacaacctcc tcaagatatc      2700
     tttagtgcct cactaccctg ggcctctctc tgatccacaa ttcctgaccc ggatgtttcc      2760
     acagttcctg gaacagtact tccataactc ggatctgact gagttcatgc gcctattcgg      2820
     tggcagtttt acacaccagg cctcagtagc aaaagttgtt ggaaagcaag ggcgaggccg      2880
     agctgggatc gaggccagtc tagatgtgga atacctgatg agtgctggtg ccaatatctc      2940
     cacttgggtc tacagtagcc ctggtattgc taagagaatt agttggggga tgggaaaatg      3000
     ggttggagta gacttttggt ctctgcttca tttcatcaag gggatgccat gggctgaagg      3060
     gagattctag caaccatcca atggccattc atatcccttc ttttaaaaca attcaggccg      3120
     ccatgaggca caggagccct tcttacaatg gctcctgctt cttagcaatg agtcatcttt      3180
     gccacatgta catactgtga gttacggaga cgatgaagac tccctcagca gcatctacat      3240
     ccagagagtc aacactgagt tcatgaaggc tgctgctcgg ggtctcaccc tcctttttgc      3300
     ctcaggtaac cttctaccat aaatttaaga cttcccacct acccaagcgg cagactttat      3360
     cccaaccgac ccttcagcct ggtttctgac tcataatagg aactcagagc cttaacaggg      3420
     tctgctgatt tgacctgagt actctgaggt ggcatataca gttcttctct ggtatataga      3480
     agcctacacc ccaagttctt cacaactaat ctgaatactt actatgtctt tcccaggtga      3540
     cactggagct gggtgttggt ctgtctccgg aagacacaag ttccgcccta gcttccctgc      3600
     ttccaggtaa gtaccccact ctttcacttg tgacagaggc caccaggagc tgctgtggct      3660
     cagccttcag cattacctgt tgtgtttgct gtgctccctt ttcttcctgc gtatcccagg      3720
     ctgcgagagc agattatggc gtttcttttc cttagttgct agggtttgtt gcttgttttt      3780
     catgtagaaa agtatataca attaactcca gccatgtctt gagagctccc aatctatcaa      3840
     taaactctgt atacaggctt ctatagtctt actccctttt ccagtaagac ccagaccatt      3900
     cccacccacc tccacacatc ttggaggtca cccattgtct tagtggggtt tttattgtat      3960
     tgctgcgatg aaacaccgtg acaaaaaaac aaaacaaaac aaaacaaaac aaaaacagtt      4020
     gaggaggaaa gggtttattt ggcttacact tccagatcac atccgtcact gaaggaaatc      4080
     aggacagaaa ctcaagcagg gctggaacct ggaagcagaa gctgatgaag aggccaggga      4140
     atggtgctgc ttactggctt gcttcccatg gcttgttcag cctgccatct tatagaaccc      4200
     acgaccatca gcccagggat gccaccctcc acaatgggct gggccctccc tcattgatca      4260
     ctaattgaga aaatgtccta cagctggatc tcatggaggc atttccttaa ctgagcttcc      4320
     tttgtctctg atgactcttg tatcaagttg acaacacaaa actaaccagc aagtacattc      4380
     actatctgaa tactgtcttc tcctcagccc ctatgttact acagttggag gaacctcctt      4440
     caagaatcct ttcctcatca cagatgaagt agttgactat atcagtggtg gaggcttcag      4500
     caatgttttc ccacggcctc cctaccaggt ttgtggatat tcctgtggat atctggaggt      4560
     tgaaggtgat gggtggggct cagtcctgca gcttgctgag caggctgctg gccaatactc      4620
     atactcagaa atgtccttca ggaggaagca gtggcccagt tcttgaaatc cagctctcat      4680
     ctaccaccat ccagttactt caatgctagt ggccgtgcct acccagatgt tgccgcacta      4740
     tctgatggct actgggtggt cagcaacatg gtccccattc catgggtatc tggaacctcg      4800
     gtaagaatca gctctgctct aaacgctcta ctcaggaact accctcgctc ctccacctac      4860
     acaatctaaa cgctctactc aggaactacc ctcgctcctc cacctacaca atctaaacgc      4920
     tctactcagg aactaccctc gctcctccac ctacacaatc taaacgctct actcaggaac      4980
     taccctcgct cctccaccta cacaatcttg aacccagaac ccccgactcc ttggagactc      5040
     ctgatcattg caagcatcat cccttagaag tccaatccct ctaaaaccct aacctattct      5100
     tgcatcttca tcttgcaggc ctctactcca gtgtttgggg gaattttatc cttgataaat      5160
     gagcacagaa tcctcaatgg ccgccctcct cttggctttc tcaaccccag gctctatcag      5220
     cagcatggga caggactctt tgatgtgagt attggaggaa agagtgtgga tgttgtcata      5280
     ggatatgaga agggctctgg tgaacttcgg cattttcact atctatgatt gcctctgtga      5340
     tatgactata aataaggtgc agtctaggag ctggtaccag caggcccaga cctgatgcca      5400
     tcatctcctc ccaggtaacc cacggctgcc atgagtcctg tctgaatgaa gaagtggagg      5460
     gtcagggttt ctgctctggt cctggctggg atcctgtgac aggttgggga acacccaact      5520
     tcccagccct actgaagacc ctgctcaacc cttgaccctt tcgtgccatg acgagaaagc      5580
     agaactgttc cctgtactaa aagggaaggc tcagtttctt gttattcctc gatagaagcc      5640
     ctgctgaact cctgttgcct gctgcagata gcttctccct aaccctcaga tgctgtgaac      5700
     aggactcaac tctcaatcct actgtgtgcc atcaaactca ggtctccaaa cttctacttc      5760
     aagatcctca acaagatgct ataaccagca tattttgtct caccccaacc ccatctctcc      5820
     ttcctctttc cagcttgaga tgtgaaagca gggcaagaag gttcagtctt ccattactga      5880
     cactagcagg tccacccaac gcttaccacc tctgcactga ccgtacactc tatttctctt      5940
     cgggtttgct tttccgttca ctgaagtgag acctttgact aatcgttttg tctttcttct      6000
     ctcggcactg aagtacaatg gtctccccaa tgttttatcc agttataccc ttttcagtgt      6060
     ttgttttatg ggttttctta tttaagaaca ggttgtcaaa aaaccatt                   6108
//