Dbfetch
ID AF016619; SV 1; linear; mRNA; STD; MUS; 3485 BP.
XX
AC AF016619;
XX
DT 29-OCT-1997 (Rel. 53, Created)
DT 23-SEP-2008 (Rel. 97, Last updated, Version 3)
XX
DE Mus musculus Rb-8 neural cell adhesion molecule short form precursor
DE (RNCAM) mRNA, complete cds.
XX
KW .
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3485
RX DOI; 10.1074/jbc.272.42.26083.
RX PUBMED; 9334170.
RA Alenius M., Bohm S.;
RT "Identification of a novel neural cell adhesion molecule-related gene with
RT a potential role in selective axonal projection";
RL J Biol Chem 272(42):26083-26086(1997).
XX
RN [2]
RP 1-3485
RA Alenius M., Bohm S.;
RT ;
RL Submitted (28-JUL-1997) to the INSDC.
RL Cell and Molecular Biology, Umea University, Umea S-901 87, Sweden
XX
DR MD5; 9ac71ba956c4906ca9a070c9c0381b83.
DR Ensembl-Gn; ENSMUSG00000022762; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0022966; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0022934; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0022904; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0022936; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0022698; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0023383; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0022220; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0022667; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0022801; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0022776; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0022870; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0022795; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0023401; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0021962; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0022268; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000037785; mus_musculus.
DR Ensembl-Tr; ENSMUST00000067602; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0044910; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0044892; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0044862; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0044868; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0044607; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0045348; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0044729; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0044519; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0044672; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0044622; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0044746; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0044601; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0045405; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0044306; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0043976; mus_musculus_wsbeij.
XX
FH Key Location/Qualifiers
FH
FT source 1..3485
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /cell_type="olfactory sensory neurons"
FT /tissue_type="olfactory epithelium"
FT /db_xref="taxon:10090"
FT CDS 100..2283
FT /codon_start=1
FT /gene="RNCAM"
FT /product="Rb-8 neural cell adhesion molecule short form
FT precursor"
FT /db_xref="GOA:O35136"
FT /db_xref="InterPro:IPR003598"
FT /db_xref="InterPro:IPR003599"
FT /db_xref="InterPro:IPR003961"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR009138"
FT /db_xref="InterPro:IPR013098"
FT /db_xref="InterPro:IPR013106"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036116"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="MGI:MGI:97282"
FT /db_xref="UniProtKB/Swiss-Prot:O35136"
FT /protein_id="AAC53375.1"
FT /translation="MSLLLSFYLLGLLVRSGQALLQVTISLSKVELSVGESKFFTCTAI
FT GEPESIDWYNPQGEKIISTQRVMLQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE
FT ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIPDNRF
FT AVLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIMMPQKSFNATA
FT ERGEEMTLTCKASGSPDPTISWFRNGKLIEENEKYILKGSNTELTVRNIINKDGGSYVC
FT KATNKAGEDQKQAFLQVFVQPHILQLKNETTSENGHVTLVCEAEGEPVPEITWKRAIDG
FT VMFSEGDKSPDGRIEVKGQHGRSSLHIRDVKLSDSGRYDCEAASRIGGHQRSMHLDIEY
FT APKFVSNQTMYYSWEGNPINISCDVTANPPASIHWRREKLLLPAKNTTHLKTHSVGRKM
FT ILEIAPTSDNDFGRYNCTATNRIGTRFQEYILELADVPSSPHGVKIIELSQTTAKISFN
FT KPESHGGVPIHHYQVDVKEVASETWKIVRSHGVQTMVVLSSLEPNTTYEIRVAAVNGKG
FT QGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKISITKQDDGGAPILEYIVKYRSKDK
FT EDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDN
FT CCEANKGENGGQSWHLNAVGFTFVITMSLSCLF"
FT sig_peptide 100..156
FT /gene="RNCAM"
FT mat_peptide 157..2280
FT /gene="RNCAM"
FT /product="Rb-8 neural cell adhesion molecule short form"
XX
SQ Sequence 3485 BP; 1151 A; 710 C; 720 G; 904 T; 0 other;
ggcggcgggc tagcagaggc ggccgtggca gcggaaggtt ctctctccgg ggctggactt 60
aataactttg gaactgtccg ccggtgtcac gtcctgaaca tgagcctcct cctctccttc 120
tacctgctcg ggttgcttgt caggagcggg caagctcttc ttcaagtgac aatttcactt 180
agcaaagtag agcttagtgt gggtgagtct aaattcttca catgtacagc cattggtgag 240
cctgagagta tcgactggta taaccctcaa ggagagaaga tcatttcaac gcagagggtt 300
atgctacaga aggagggtgt caggtcacga ctcaccatct acaatgcaaa catagaagat 360
gcagggatat atcgctgtca agcgacagat gccaaaggac agacacaaga agctacagta 420
gttttggaaa tttaccaaaa actcaccttc agagaagtgg tgtcccctca agagttcaag 480
caaggggagg atgcagaagt ggtttgcaga gtgagcagtt ccccagcccc tgcggtcagc 540
tggttgtacc acaatgagga agtcaccacc atccccgaca atcggtttgc agtgcttgca 600
aacaataatt tgcagatcct caatatcaat aaaagtgatg aaggtatata cagatgtgaa 660
ggaagagtgg aggcgagggg agagattgac ttccgggata tcattgttat tgttaacgtt 720
ccaccagcaa tcatgatgcc ccagaagtcc ttcaatgcta cagcagagag aggagaagag 780
atgaccttaa catgcaaggc ctcgggctcc ccagatccaa ccatctcttg gttcaggaac 840
ggcaaactca ttgaagaaaa tgaaaagtat attttaaagg gcagtaatac agagctcact 900
gtcaggaaca taatcaataa agacgggggc tcttatgtct gcaaagcaac aaacaaggca 960
ggagaagatc aaaagcaggc cttccttcaa gtctttgtac agcctcatat attacaactt 1020
aaaaatgaga caacatctga gaatggtcat gtcacactcg tatgtgaagc agaaggggag 1080
cctgttccag aaatcacatg gaaaagagcc atagatggag tcatgttttc tgaaggtgat 1140
aagagtccgg atggccgcat cgaagttaaa gggcagcatg gacgctcttc actgcacatt 1200
agagatgtga agttgtcaga ttcggggaga tatgactgtg aggccgctag tcggattggt 1260
gggcaccaga ggagcatgca cctggacatc gaatatgctc ctaagtttgt ttcaaatcag 1320
acaatgtatt actcttggga aggaaatcca atcaacataa gttgtgatgt gacagcaaac 1380
ccacctgcgt caatccactg gagaagagag aaactgctct taccagctaa gaatacgact 1440
catttaaaaa ctcacagtgt aggaagaaag atgatactcg agattgcccc cacatcagac 1500
aatgactttg gacgatataa ctgcacagct actaaccgta taggcacaag atttcaggaa 1560
tatattcttg aattagcaga tgtcccctct agtccccatg gagtgaagat tatagagctg 1620
tcacagacca cagccaagat ctctttcaat aaacccgaat cccatggagg tgtgcctatt 1680
catcactatc aagtggatgt caaagaagtg gcatcagaaa cctggaaaat agtacgctcc 1740
catggagttc aaacgatggt tgttttgagc agtctggaac caaatacgac ttacgaaatt 1800
agggttgcag cagtgaatgg caaaggtcaa ggagactaca gtaaaataga aatattccag 1860
acactgccag tccgtgagcc aagtccccct tccatacatg gacagccaag cagtggcaag 1920
agttttaaaa tcagcatcac caagcaagat gatggagggg ctcctatttt agaatacatt 1980
gtaaaataca gaagtaaaga caaggaagat cagtggctag agaagaaggt acagggaaat 2040
aaagaccaca ttatcttgga gcatctgcag tggacaatgg gctacgaagt gcaaatcaca 2100
gctgccaaca gactgggata ttctgagcct actgtatatg agttcagcat gcccccaaaa 2160
cccaacatta ttaaagataa ttgctgtgaa gcgaataaag gtgaaaatgg aggccagtca 2220
tggcatctga atgctgttgg gtttactttt gtaataacca tgagtttgtc ttgtttgttt 2280
tagtgttcta tgttctatgg tactccctga tcagagataa aagagtaggt acaggctaat 2340
caaaaatttt aatcaacatt ttcagtccag ttcaatttat gtttacacaa ttcgccttcc 2400
ccctgaattc agtactttct ctaattttat ctgtgtaatt tggaagaaag caatgcagaa 2460
agaaattaca gaagaagttt tttcttgcaa atactttttc agtaacaata tgtttgactc 2520
ccaatccatt actttgcaaa gtagactttg ttacattgaa tttaatttct atagtgggtc 2580
ttgctttcat ttcagtatgc aaatatcatt caacatccat cccataagta taaaacaagt 2640
aaatttttgt tttacaaaat tgtgaatcac ttctaacaag tctttaatac tgttaaaaga 2700
aaatttctgg ttttgtgaac atttctcgat tttatagtgc ctaccattta tataaatcat 2760
aagcttgata ccctattata tcaggtacat ctatttcttg ttctgctttc tgtagtttga 2820
gataaacact ctctgaagaa acaaaatata atcaaatttc ctttcatttt tgaacatcca 2880
attaacattt tcttaagtga atatgcgtct ctcccattat cgataataag taaacttaat 2940
ctcagtacat ttaaatgcta ctaagttcag tatgttcaca ggaacctttg gccagtggtg 3000
cagatctaaa tctgttccag gtatctattt cattttcact actgctgaca ttccctctct 3060
tttgcaagca tcagaataca aagtggccat tttaggcatt actttaaagg aggtggaaat 3120
gagagggaaa caagaggctg ctgtattcag ataaaaacaa aacaaaacaa aacaaagcaa 3180
agcaaaacaa aaccaaagta aaacacacaa acccaaactg aaaccaacca accaaacaaa 3240
caaacaaaaa actcaattgg aaaaaataca ggaaaaattg tatgtctttc tcaagtttcg 3300
gttattcgtt aatgagagga atgtgctgtt agctttgaat cacatcctat gaaataatga 3360
ttagtattta aggcagttaa gaaaccacac atgcaccaac agacacacac acacacacac 3420
caacactcac acacatgcac atacaaccac accatataga caaatataac catctttact 3480
tgctc 3485
//
