Dbfetch

ID   AB062109; SV 3; linear; genomic DNA; STD; MUS; 8003 BP.
XX
AC   AB062109; AB062107-AB062108;
XX
DT   23-NOV-2001 (Rel. 69, Created)
DT   02-APR-2009 (Rel. 100, Last updated, Version 8)
XX
DE   Mus musculus C6st gene for chondroitin 6-sulfotransferase, complete cds.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-8003
RA   Uchimura K., Muramatsu T.;
RT   ;
RL   Submitted (22-MAY-2001) to the INSDC.
RL   Contact:Kenji Uchimura Nagoya University School of Medicine, Department of
RL   Biochemistry; 65 Tsurumai-cho, Showa-ku, Nagoya, Aichi 466-8550, Japan
XX
RN   [2]
RX   DOI; 10.1074/jbc.M104719200.
RX   PUBMED; 11696535.
RA   Uchimura K., Kadomatsu K., Nishimura H., Muramatsu H., Nakamura E.,
RA   Kurosawa N., Habuchi O., El-Fasakhany F.M., Yoshikai Y., Muramatsu T.;
RT   "Functional analysis of the chondroitin 6-sulfotransferase gene in relation
RT   to lymphocyte subpopulations, brain development, and oversulfated
RT   chondroitin sulfates";
RL   J Biol Chem 277(2):1443-1450(2002).
XX
DR   MD5; 6725540baf76e954c18f69baca951f30.
DR   Ensembl-Gn; ENSMUSG00000057337; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0017266; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0017244; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0017204; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0017204; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0017027; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0017662; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0016598; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0016999; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0017104; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0017098; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0017179; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0017126; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0017700; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0016381; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0016662; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000068690; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000167915; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0025317; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0025293; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0025250; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0025256; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0025066; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0025756; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0024616; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0025001; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0025117; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0025110; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0025233; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0025111; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0025800; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0024329; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0024605; mus_musculus_wsbeij.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..8003
FT                   /organism="Mus musculus"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10090"
FT   mRNA            join(1..135,236..388,4416..4643,5832..7110)
FT                   /gene="C6st"
FT                   /product="chondroitin 6-sulfotransferase"
FT                   /note="alternative splicing"
FT   mRNA            join(1..135,4416..4643,5832..7110)
FT                   /gene="C6st"
FT                   /product="chondroitin 6-sulfotransferase"
FT                   /note="alternative splicing"
FT   exon            1..135
FT                   /gene="C6st"
FT                   /number=1a
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   gap             136..235
FT                   /estimated_length=unknown
FT   mRNA            join(236..388,4416..4643,5832..7110)
FT                   /gene="C6st"
FT                   /product="chondroitin 6-sulfotransferase"
FT                   /note="alternative splicing"
FT   exon            236..388
FT                   /gene="C6st"
FT                   /number=1b
FT   gap             389..488
FT                   /estimated_length=unknown
FT   mRNA            join(4182..4643,5832..7110)
FT                   /gene="C6st"
FT                   /product="chondroitin 6-sulfotransferase"
FT                   /note="alternative splicing"
FT   exon            4182..4415
FT                   /gene="C6st"
FT                   /number=1c
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   exon            4416..4643
FT                   /gene="C6st"
FT                   /number=2
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   CDS             join(4504..4643,5832..7110)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C6st"
FT                   /product="chondroitin 6-sulfotransferase"
FT                   /db_xref="GOA:O88199"
FT                   /db_xref="InterPro:IPR000863"
FT                   /db_xref="InterPro:IPR016469"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="MGI:MGI:1858224"
FT                   /db_xref="UniProtKB/Swiss-Prot:O88199"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="BAB72166.1"
FT                   /translation="MEKGLALPQDFRDLVHSLKIRGRYVLFLAFVVIVFIFIEKENKII
FT                   SRVSDKLKQIPHFVADANSTDPALLLSENASLLSLSELDSTFSHLRSRLHNLSLQLGVE
FT                   PAMESQEAGAEKPSQQAGAGTRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIE
FT                   RTVFFQQRGASAAGSALVYRDVLKQLLLCDLYVLEPFISPPPEDHLTQFLFRRGSSRSL
FT                   CEDPVCTPFVKKVFEKYHCRNRRCGPLNVTLAGEACRRKDHVALKAVRIRQLEFLQPLV
FT                   EDPRLDLRVIQLVRDPRAVLASRIVAFAGKYENWKKWLSEGQDQLSEDEVQRLRGNCES
FT                   IRLSAELGLRQPAWLRGRYMLVRYEDVARRPLQKAREMYSFAGIPLTPQVEDWIQKNTQ
FT                   ATRDSSDVYSTQKNSSEQFEKWRFSMPFKLAQVVQAACGPTMHLFGYKLARDAASLTNR
FT                   SISLLEERGTFWVT"
FT   exon            5832..8003
FT                   /gene="C6st"
FT                   /number=3
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
XX
SQ   Sequence 8003 BP; 1780 A; 2018 C; 2077 G; 1928 T; 200 other;
     agagtgggcg ccgtggggag cgcagcccca gcattttctg agccgagagc gcagttgggg        60
     gcggatgctg ccggggctgg acgccgacct ccggagtgtc ggatccgccc gccgggagga       120
     ggaggctcga ccgggnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnggatt       240
     caggaacccc ggctccctgc ttcctactgg gtgacacaga gggatcagcc ctctggcctc       300
     acaactttcc cacagcagcc agatcttccc tctgcctgtg gagccccgtg gagccgcgtt       360
     ttttctactt ggaaagctgt atatacagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnga gctctggtat gctaagtcag cacaggagga atagggattt ttttggcttc       540
     tctgggctct attgaaagaa gaagaatggt cttgggcaca tgttaaatag aacgaactcc       600
     agtgctgaga ccagaaagga tgcgcccccg ggtggggaat agtgggaagg gctggggtca       660
     gatggtgccc ataaaggctg ggaatgaggt gtggctccca tccccagggc cttggagggc       720
     ttgtgttctg ctctgagttg tgcacgaagg gttttcagca gctagagtca cccggagtac       780
     tgggctgggt gtctaagacg ctctcgacat caggaccgcg ttcgcgtatc tgagttaagg       840
     tgctcgtagg cgcccccgtg tgttggagac ggggagagtt tgggagagga atgtggacgg       900
     aatgcgaacc agaagactca gctgtgctga tggaccagaa gagaggagtg agatgcgtga       960
     aaaggaggcc accatcgcct aagaagagtg agggaagagc gcacccccag ggaatcccag      1020
     aggaagcttt agtagagaac ggccagagcg caggagagga agagggaggg gcacaccatg      1080
     cagtccccag gttgaaatgt agcaagggcc accctctcac agaaggtgac tgaggactcc      1140
     cccagggtgt ttttaaggga aaaaaggata ttgcagaacg agaggactga gacacaaagg      1200
     ccagagagaa atatgaggca ggaggatgat cctcttgaga actgtgcggc tgattactat      1260
     gagtggctta tgagaatgtt tcccagctta tacccactgc cacctcccag acggcaaggc      1320
     tggatgctgc tccctcttgt ggctcccaac atcgctaggc cagacgcaca gtggccctca      1380
     ccaaatagaa gtgtccatgg agaacctcag cccggccgac atcttctttt actgctcctg      1440
     gtgtttgtac ccagcaggct gtgcccaggc agagctgggt tgggcatgag gtcctggcat      1500
     ctttcagcac tgacaaggac atgttagcag gctggccttt agtggcacct tggcagtggg      1560
     gctggggagt tgagagccat ggagtagagg atgctgggaa ggccatcaag ggaagaggca      1620
     gcagggattt ccagccaggc aaggatctca ggaccagcat gtgcttgcca accctggaag      1680
     agaagtagca tgaagtttca accatgttat agcccacttc ttacacaggg cgtcctgcag      1740
     ggcaagctct gccacagtct ctgcccagtg agtcccattc cggggccctc ttcgcctttc      1800
     ttggccctgt gaactcctgg ctttggggtc ctcacgcatt cctccctctc ctggatagtc      1860
     acctggcctt gggcctctca aggctgcaga ggggacatcc aaccagggat gggtgacaga      1920
     gctgccagtc tgctcacgcc ataccagtat tcagtcttcc ttcttcctgg cagtgcttgg      1980
     gaaccctgca tttctgtgag ggagaggagg ctgggttaat gacttcaaaa tataaagcca      2040
     ctggaagagg tggggaaggg aagatgggaa agcttgtcat cagaggagcc caactcccaa      2100
     acctgactgt gtgcctggga tcgagcttgg ggctccagat gctaggtatt cactgtgata      2160
     ccgggcttca ttctttgttg ttgttgttgt tgttttgaga cacagtcaaa ctaagttgcc      2220
     ctggcaggtc ttgaacttgc aatcctcttg cctctgccag ctgaatagct gggattacag      2280
     atttatggcc ataaggaaaa ccttgccaaa ggtgctagcc tcaggagcga aaagacatgc      2340
     tagaccacgc caccacccca ccctaccccc gctgcccctg ctctactcaa ggttccccct      2400
     ctccccttac tcctctccct cccatcttct tcataatgaa tgcttaccaa gttccagatg      2460
     ctaggcacgt gctctgccac taagccatga ttgccaaccc cctttgatgt ctttgtataa      2520
     cctagagatt ctggaaatac aagaccaata agcttgccca gcacagcata ctgtgtcttg      2580
     tgtagctaag ggtaggtagc catgaacttc tgagccacag tctcagccct gttatgcttt      2640
     tgtatggcgg gtcgcccagc aggctacttt acactagtat cattgcaaca tgtgacactg      2700
     gtagctgtga tgtcattatc gaaccaggat tctgcagctc catggcacca tcttaacagc      2760
     agggaccagt gatgacgtac actttccatt atctaaatac tatgtgtgat gtgtgatggt      2820
     gcatgccttt aacctgtgag gtcaacagag aaactccagg aaatgagagt agataaaagg      2880
     gcattcattc atttactcat tcatgcatca ggtctcagtc tagcccagca gaactctgta      2940
     gctcaaacta gcattgaatt taaaaataga ttcccgcctc attttttttt tttttttttt      3000
     tttttttttt ttttttttgg tgctagggtt acaggtctgt aatgtcatgt cctggctcct      3060
     tgctagcatt tgggtgtttt attgctgttt gtcgagtaca gtttttgcta ccctgcttta      3120
     cctgagcagg ttcttccaga tgcatgcatg aaacacacac acacacacac acacaccaca      3180
     cacacactaa tttattttca acctgcctta ttgactcaat tgctaggctc ttctaatctc      3240
     ccatagctag tgtgcccttc ccaatactct tagctcagca tctcttaatc tgcccttaat      3300
     ttagctgcat ttttaatctt ctgcctgggg aagtggccta tggccactcc gcccgagatc      3360
     tcacatggct ggtcaccttt tctccctctg aagcatggcg agatctcttt tcctctttct      3420
     gcatctctta gcctgcctgt ggggacctga aagtcctgct ttttttcctt ctgcccagca      3480
     attggcccct ggcatcttta tttatcaatc aagaaccaat tggggaacat gaccttagca      3540
     gcagcaccac tccctgcagc tgtttatttt gtttatttgt ttgtttgttt ttaagggaaa      3600
     gcaagaaaag tttattggat agagtaacag ctactggaag taatacttgt ttatcatagg      3660
     acttttaaaa aatatttatt tcatgcgtgt gaccattctg cctgcttgta tgtctgtggg      3720
     catcacatgc atgcagtagc tgtagagaca aagaaggcac cggattcctt agaaatggag      3780
     ttatcgatgg ctgtgaactg ctgttcgggt gctgggaact aaacctgggt cttctgcaag      3840
     agcattgagt tttgttttgt tttgtttgtt tgtttttcga gacagggttt ctctgtgtag      3900
     ccctggctgt cctggaactc actctgtaga ccaggctggc ctcgaactca gaaatccgcc      3960
     tgcctctccc tcccgagtgc tgggattaaa ggtgtgcgcc accacgcccg gctacattga      4020
     gtattcttag ccactgaacc atctctccag cctctgtttt ggggtgtttg tttgagacag      4080
     aatcaaaagg ctggtctaaa gtacatattg tagctaaaag atggcttcca actcctgcct      4140
     tgcctccaga gtgttagggt gtgaccttta aatgacctat taaagaaacc ccaacaggtg      4200
     tagagtacac ctgtgatccc agctcttagg aggttggaca gatggataaa gaggtccagg      4260
     tgtcccggac tacatagaga gaccctatct caaaagagag gcgaagactt aggttttgag      4320
     agtgggcctg aggtctctct tcaaaagttt tatagaaaga tgtctctgtt ccctgtctat      4380
     gaacacggat ggcctgagca cctgtctctt cacaggatca gagtgtcccc cacctgaaga      4440
     gggctgattg ggtcccaagc tatgctcctg agttgagtgc ctgcagccag tctgaggaac      4500
     tccatggaga aaggactcgc tttgcctcag gatttccggg accttgtaca cagcctaaag      4560
     attcgaggca gatacgtctt gttcctggca tttgtggtca tagtttttat cttcattgaa      4620
     aaggaaaata aaatcatatc caggtaagga actcaaccac aggtcccctt tatccaaggt      4680
     gaggtcagag gtgacactag ggtttttggg ggaatcaaga agtgcatccc ttctacaagc      4740
     ggccgtcaga cagcccctgt gtcttaggct gaggtcatgt gcacagggtg cagactttgg      4800
     cagcccaggc tggcaccccc atactggccc ttctcaactg caagcgctta ggcaaaacac      4860
     atccctttgt tgaggtgggc ctttctaacc agtgactagc agtgggcctg tcttgaggaa      4920
     aaggttaatg tggggggctg gagagatggc tcagtggtta agagcactga ctgctcttcc      4980
     aaaggtcctg agttcaattc ccagcaacca cacggtggct cacaaccatc tgtaatggga      5040
     tctgatgccc tcttttggtg tgtctgaaga cagctacagt gtactcgtat agataaaata      5100
     aataaataaa taaatctttt tttaaaagag agagagaagg taaatgcgga aatgtaaacc      5160
     acattttgcc catggcctgc cacatggctg aagcttggta cttgctggca tgactatttc      5220
     accttctgtc ctagcgcccc ttagcagtac ttcccctttg caagtcttga tgtcatgagt      5280
     ggaggtgagc ccatgggaag caaggttctg gtatggccac tctggtgggt gggaccatca      5340
     tgggtaggta ccagatggtt tatctttcaa ctctaaggga gtgagcctca ggtaggctac      5400
     atactccttg agttggcagg gtactgctgt gtggggtgga cctgctagac acagaaccat      5460
     ttttcaactc agatctccca gatgcatagc cccacataac atcctcagcc aaagagggta      5520
     ggttaaggac tgccaacgaa tcagctcatg cctgcttcac accatgtaac tctcctgaaa      5580
     gttgctactg acttgctcca aaccagccag aagtgtcaga gggtaaagtg cccgagttct      5640
     ttagtgaagg tgagcctctg tgtagccatc actagtcact tagcttctca ccctgaatca      5700
     ctcctgggtt cttgccaaag aaaccacact cgaaccttag cctctagacc cagctaagac      5760
     tgcttatcct agtacaggag atggcctccc aaatcagtca ccgaccttgt cctttgtaaa      5820
     tcccctccca gggtctccga caagctgaag cagatccctc attttgtggc agatgccaac      5880
     agcactgacc cagccctgct cttatcggag aatgcatctc tcttgtccct gagcgagttg      5940
     gattccacct tttcccatct gcggagccgc ctgcacaacc tgagcctgca gctgggcgtg      6000
     gagccagcaa tggagagcca ggaggctggg gcagagaagc catcccagca ggctggagca      6060
     gggacccggc gccacgtgct tctcatggcc accacccgca cgggttcctc gttcgtgggc      6120
     gagttcttca accagcaggg caatatcttc tacctcttcg agccactgtg gcacatcgag      6180
     cgcaccgtgt tcttccagca gcgaggcgcc agcgcggctg gttcagcctt ggtctaccgt      6240
     gatgtcctca agcagttgtt gctatgcgac ctgtatgtgc tggagccctt catcagccct      6300
     ccgcccgagg accacttgac tcagttcctg ttccgccggg gatccagccg ttcactctgc      6360
     gaggatccgg tgtgcacacc cttcgtcaag aaggtctttg agaagtacca ctgcaggaac      6420
     cgtcgctgcg ggccactcaa cgtgaccttg gcgggcgagg cctgccgccg caaggaccac      6480
     gtggccctca aggctgtgcg catccgtcag ctggagttcc tgcagccgct agttgaggac      6540
     ccgaggttgg atctacgagt cattcagctg gtgcgcgacc cccgggccgt gctggcttca      6600
     cgcatagtgg cctttgcggg caagtatgag aactggaaga agtggctgtc cgaggggcag      6660
     gaccagctga gcgaggatga ggtgcagcga ttgcggggca actgtgagag catccgcctg      6720
     tctgcagagc tgggcttgcg gcagccagcc tggctgcgcg gtcgttacat gctggtgcgc      6780
     tatgaggatg tggcacgcag gccactgcag aaggcccgag agatgtacag ctttgcgggc      6840
     atccccttga ccccgcaggt ggaggactgg atccagaaga acacgcaggc gacacgcgac      6900
     agcagcgatg tctactccac tcagaaaaac tcttctgagc agtttgagaa gtggcgcttc      6960
     agcatgcctt tcaagctggc acaggtggta caggctgcct gtggcccgac catgcacctc      7020
     tttggctaca agttggccag ggatgccgcc tcactcacca accgctccat cagcctgctg      7080
     gaggagcggg gcaccttctg ggtcacgtag tgggggatgt ctgggaccct tggaactcct      7140
     tcttgtgaaa ggctggccct gcttccctca cacccagcct ggcagtgaga catagccctg      7200
     gcagaaagtc aaaatgggga gcgatgatgg gaacatagcc cctggctgta gcggtagggc      7260
     cccctgccag ctagactccc cagagcagct acagctaggg ccttgggctc ctctgaggac      7320
     accctgtctc cttagtggta ctggtcataa ggtgtcctca ccctatgacc tgcagtgtcc      7380
     cgagcaggtc aaggtaggtt cctgtgtgtg gacacacctc cctagctctt tctcacacag      7440
     tctacacgaa gcctgtaaag gcctgtaggt tgtgtgggct ggagtccaag tatttaacaa      7500
     ccagaagggg tgtagaccct ctgcagcctc tcagacctcc tactgtatta agtgttaacc      7560
     tcttccgctc tgagtcagag aagctgggat ctggctgagt cctgggaagg aggaggacag      7620
     cctagggtga ggaaggggac ctttgaagct cctcagggaa cagtggctgt gtaccagctc      7680
     atagaaaatg gtttgatcag ctgttctagt cactcatgag tatcaatcag cctgtgtaga      7740
     gcaagacaca caaagtgcat tgaaaacaga caaggccagg ggtgtggctc agcggtaaag      7800
     cccttgcctc tctcatgccc agggccctag gtgtgattct tagcactata aatataaggg      7860
     aaaataagcc atacatacgt gtgcagtaca gagagagaca gaaaagcgta ataaacattc      7920
     ccccctctca taagcacacg ctctgcctct gtctctgtct ctgtctctct ctgtctctgt      7980
     ctctctctgt ctctctctct cac                                              8003
//