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EBI Dbfetch

ID   AAMC01070860; SV 1; linear; genomic DNA; WGS; VRT; 1796 BP.
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AC   AAMC01070860; AAMC01000000; AAMC00000000;
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PR   Project:PRJNA12348;
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DT   18-NOV-2009 (Rel. 102, Created)
DT   18-MAY-2012 (Rel. 112, Last updated, Version 3)
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DE   Xenopus (Silurana) tropicalis XENTRscaffold_295_Cont70860, whole genome
DE   shotgun sequence.
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KW   WGS.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
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RN   [1]
RP   1-1796
RX   DOI; 10.1126/science.1183670.
RX   PUBMED; 20431018.
RA   Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA   Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA   Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA   Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA   Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA   Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA   Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA   Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA   Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT   "The genome of the Western clawed frog Xenopus tropicalis";
RL   Science 328(5978):633-636(2010).
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RN   [2]
RP   1-1796
RG   US DOE Joint Genome Institute (JGI-PGF)
RA   Lucas S., Shapiro H., Lindquist E., Tice H., Dalin E., Glavina del Rio T.,
RA   Bruce D., Barry K., Pitluck S.;
RT   ;
RL   Submitted (10-NOV-2009) to the INSDC.
RL   US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA
RL   94598-1698, USA
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DR   EMBL-CON; GL172931.
DR   GOA; F6UUA0.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR001723; Str_hrmn_rcpt.
DR   InterPro; IPR003079; ROR_rcpt.
DR   InterPro; IPR008946; Nucl_hormone_rcpt_ligand-bd.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   UniProtKB/TrEMBL; F6UUA0; F6UUA0_XENTR.
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CC   URL -- http://www.jgi.doe.gov/xenopus
CC   JGI Project ID: 2662311
CC   Source DNA and organism available from R. Grainger
CC   (rmg9p@virginia.edu)
CC   Contacts: Richard Harland (harland@berkeley.edu)
CC             Uffe Hellsten (uhellsten@lbl.gov)
CC             Daniel S. Rokhsar (dsrokhsar@yahoo.com)
CC   This is a draft assembly based on ~7.6-fold shotgun sequencing of
CC   an inbred Nigerian frog. As with any draft assembly it contains
CC   gaps and may contain errors, and users should exercise caution.
CC   ##Metadata-START##
CC   Organism Display Name :: Xenopus tropicalis
CC   GOLD Stamp ID         :: Gi00722
CC   Assembly Method       :: JAZZ
CC   Assembly Name         :: v4.2
CC   Genome Coverage       :: 7.6x
CC   Sequencing Technology :: Sanger
CC   ##Metadata-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1796
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:8364"
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SQ   Sequence 1796 BP; 570 A; 334 C; 300 G; 592 T; 0 other;
     ttcgtgagat cctgtgagtg ccgacaattt ttcctttatt ctactatttc tgctcgtgca        60
     cccaggtatc gcatttgaat ttgggtgtgc tctccattct gcaattttat atatatatat       120
     atatatatat atatatatat aaatacacac tatacaagtc atctattttt tatgtagaat       180
     tttttgtagt attttattat gtattgttcc attttgtagc ttgataacat aataaaatac       240
     atatacacaa attatagaaa aaaaatacat atacacatac ttacatgtga cctcagggat       300
     ttgatgctta agctagccag aaagtcacta tttaaagcca catacataac ttttccactg       360
     ttaataaaag ttaacttcta acataaagct atggccacta ataaattgca ttatttttgc       420
     acgaagcagc catgttgcgg tacatatgta tatatttact aacatactgc ctgactacta       480
     gagcatgtgc agtttgcatg ttagacataa tgctcatgtt tttacaatgt actgtacctt       540
     acaaccctcg cacgtgatga ccccataatg aatccctgaa gatttgtctc cacagatttt       600
     gcatggaatt atttcaattt gagctgtaga atgagagtaa agcagagagt taattatcaa       660
     gttgcacaag aagaacaaag gcaaagatct gaatgctctt ccccatgtcg cctgttcccc       720
     ccagggctcc catttagaat atagctgctt gttatcatac gattttagat aattaaaata       780
     agctatgcaa tgtgaagccc tagagtaaat ctgcatgttt gttcacaccc cttcttataa       840
     acataacata ggtaatagaa aataaatgaa cagcttggct gcaaatgatt ctgttgccaa       900
     ctttatgcag gctttcatct accttaatat caagcccagg tgacaaacag agaaaagagt       960
     tttcctactg gacaaatatt ttgcggcata agcaaggcaa aatacaatat ttatactact      1020
     tggacatgtt tattataata tacgtgcacc ctatcactca tgctatcatt atgtgaaatt      1080
     cactaggtcg tttttactta actgactggc cattagtcta tgtgaggggg ccccaatttg      1140
     acccctttaa attacatgca atagattgtt gcaaatgtcc acaatgcttc aaaatcaaga      1200
     cccaaactgc agctttaggt tgctgtcact gatattatgc ggtaaaataa tttaatctgt      1260
     atcctggaca taggggtgca acaaagagtg cacagggttt tacagacttt gtgacatagt      1320
     agcatacttc ataagaaatg tatgagcatg gacgttacaa gtttaccagt gtatgcgcaa      1380
     ataaatatct gttcacagca cagaaaacaa ggagatgcta tttgccaaat aggcagttct      1440
     gtcttcaaag ccttagtaga tgtaactaag gctacatcct agtcaggggg cctgtgggtg      1500
     agtctgcaca tacacagttt attctttatc actggcaggg cagcaaccct acctggatat      1560
     gatttagcca ttgtgcataa ggttacagag atgtttcact tttgtctttc aagaggaatt      1620
     aacatcatca attaagaaat ctgtagacca attttccatt cggggacaca attgcttttc      1680
     tttaaaggat tctgtcataa gttttatgtt gtacttttta tttctaaatg acactgttta      1740
     catagctaat aattcactct atcattttca attttatttt tgaaccaaca aatgta          1796
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