Dbfetch

ID   AAMC01070859; SV 1; linear; genomic DNA; WGS; VRT; 1385 BP.
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AC   AAMC01070859; AAMC01000000; AAMC00000000;
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PR   Project:PRJNA12348;
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DT   18-NOV-2009 (Rel. 102, Created)
DT   18-MAY-2012 (Rel. 112, Last updated, Version 3)
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DE   Xenopus (Silurana) tropicalis XENTRscaffold_295_Cont70859, whole genome
DE   shotgun sequence.
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KW   WGS.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
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RN   [1]
RP   1-1385
RX   DOI; 10.1126/science.1183670.
RX   PUBMED; 20431018.
RA   Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA   Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA   Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA   Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA   Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA   Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA   Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA   Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA   Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT   "The genome of the Western clawed frog Xenopus tropicalis";
RL   Science 328(5978):633-636(2010).
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RN   [2]
RP   1-1385
RG   US DOE Joint Genome Institute (JGI-PGF)
RA   Lucas S., Shapiro H., Lindquist E., Tice H., Dalin E., Glavina del Rio T.,
RA   Bruce D., Barry K., Pitluck S.;
RT   ;
RL   Submitted (10-NOV-2009) to the INSDC.
RL   US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA
RL   94598-1698, USA
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DR   EMBL-CON; GL172931.
DR   GOA; F6UUA0.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR001723; Str_hrmn_rcpt.
DR   InterPro; IPR003079; ROR_rcpt.
DR   InterPro; IPR008946; Nucl_hormone_rcpt_ligand-bd.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   UniProtKB/TrEMBL; F6UUA0; F6UUA0_XENTR.
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CC   URL -- http://www.jgi.doe.gov/xenopus
CC   JGI Project ID: 2662311
CC   Source DNA and organism available from R. Grainger
CC   (rmg9p@virginia.edu)
CC   Contacts: Richard Harland (harland@berkeley.edu)
CC             Uffe Hellsten (uhellsten@lbl.gov)
CC             Daniel S. Rokhsar (dsrokhsar@yahoo.com)
CC   This is a draft assembly based on ~7.6-fold shotgun sequencing of
CC   an inbred Nigerian frog. As with any draft assembly it contains
CC   gaps and may contain errors, and users should exercise caution.
CC   ##Metadata-START##
CC   Organism Display Name :: Xenopus tropicalis
CC   GOLD Stamp ID         :: Gi00722
CC   Assembly Method       :: JAZZ
CC   Assembly Name         :: v4.2
CC   Genome Coverage       :: 7.6x
CC   Sequencing Technology :: Sanger
CC   ##Metadata-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1385
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:8364"
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SQ   Sequence 1385 BP; 492 A; 260 C; 227 G; 406 T; 0 other;
     cagataatta gtagataagc cccatataat gggggtttat ccgttatcgg ctaagtaacc        60
     tgtgcctttt ctcctttgaa tggctgcccc catggctaca cagcagctta cttatataaa       120
     ctatagtagt ctttctgagg caaacacacc agttgtagca atgcagggca acagtacatt       180
     atattgttat tacttttata cactttcatt ttttggtgtt actgttcctt taacaaacac       240
     aataaaaaag aaattggaat taattattag ggtgacaagt cccctttaag tgagcttttt       300
     gatgttgtta tgaaaatagc aacacaaaat ccaagggcac taaggtaacc cacagatctc       360
     atttatgtaa cagtaacatg agttaataag gtccttaaca ctgcaactgc agttaggcta       420
     gtggcgaccc cacccccttc cccctaagtt ttcaaacaca actgtaaaaa aaaaaattgt       480
     aaggactaat tgtcattttg tgtagcatta gccagcagca ctatgactgc acacttgcta       540
     atcacattct cactgtcaga acacagtggc cttcttgtca tgtcatgaac caagaaataa       600
     taagaactgt caagtgccac ttgccctaga agctaagtgt ggaccaagaa agaagcagaa       660
     actggggcag aggcagaaca ggcattttca accattaaca tattttatta aaagcaccag       720
     taggtaaaaa ggcaggcaag gttagtactg gtactggcaa ggcaggacag caagttgtat       780
     ccatgtagca agcactgtaa ctggctaagc aggccagaca ggcaggtagc aaggtagata       840
     cagcaacagc caaggtaagc atgtataaaa acatataaat atataaaaaa atgctgatgc       900
     acacccggaa aattttaatc aaaaaaagat actcatttta tttggatcaa catttcagtc       960
     ctcacccagg acctttatca agatatcact gtgcatatat atatatatat atatatatac      1020
     atacacacac acacacacac acacataata tatatatata tatatatgta aaaaatgctg      1080
     atgcacacca ggaaaatttc atcataaaaa aagtatcttt tttggatgaa attttcctgg      1140
     tgtgcatcag cattttttac atatttacat tgtttatctg atttgcaccc aggttgtaat      1200
     ccctataagt gtgtgcctca gcctttttct atatatctat atatataaat atatatttat      1260
     atatatatat atatatatat atatatatat atatatatat atagtataaa aaagaccagc      1320
     aactccggga tttcttgtga aaaatcaaaa catgtattca aagtagcata aacagcctgt      1380
     tatgc                                                                  1385
//