Dbfetch

ID   AAMC01070858; SV 1; linear; genomic DNA; WGS; VRT; 1352 BP.
XX
AC   AAMC01070858; AAMC01000000; AAMC00000000;
XX
PR   Project:PRJNA12348;
XX
DT   18-NOV-2009 (Rel. 102, Created)
DT   18-MAY-2012 (Rel. 112, Last updated, Version 3)
XX
DE   Xenopus (Silurana) tropicalis XENTRscaffold_295_Cont70858, whole genome
DE   shotgun sequence.
XX
KW   WGS.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-1352
RX   DOI; 10.1126/science.1183670.
RX   PUBMED; 20431018.
RA   Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA   Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA   Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA   Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA   Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA   Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA   Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA   Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA   Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT   "The genome of the Western clawed frog Xenopus tropicalis";
RL   Science 328(5978):633-636(2010).
XX
RN   [2]
RP   1-1352
RG   US DOE Joint Genome Institute (JGI-PGF)
RA   Lucas S., Shapiro H., Lindquist E., Tice H., Dalin E., Glavina del Rio T.,
RA   Bruce D., Barry K., Pitluck S.;
RT   ;
RL   Submitted (10-NOV-2009) to the INSDC.
RL   US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA
RL   94598-1698, USA
XX
DR   EMBL-CON; GL172931.
DR   GOA; F6UUA0.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR001723; Str_hrmn_rcpt.
DR   InterPro; IPR003079; ROR_rcpt.
DR   InterPro; IPR008946; Nucl_hormone_rcpt_ligand-bd.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   UniProtKB/TrEMBL; F6UUA0; F6UUA0_XENTR.
XX
CC   URL -- http://www.jgi.doe.gov/xenopus
CC   JGI Project ID: 2662311
CC   Source DNA and organism available from R. Grainger
CC   (rmg9p@virginia.edu)
CC   Contacts: Richard Harland (harland@berkeley.edu)
CC             Uffe Hellsten (uhellsten@lbl.gov)
CC             Daniel S. Rokhsar (dsrokhsar@yahoo.com)
CC   This is a draft assembly based on ~7.6-fold shotgun sequencing of
CC   an inbred Nigerian frog. As with any draft assembly it contains
CC   gaps and may contain errors, and users should exercise caution.
CC   ##Metadata-START##
CC   Organism Display Name :: Xenopus tropicalis
CC   GOLD Stamp ID         :: Gi00722
CC   Assembly Method       :: JAZZ
CC   Assembly Name         :: v4.2
CC   Genome Coverage       :: 7.6x
CC   Sequencing Technology :: Sanger
CC   ##Metadata-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1352
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:8364"
XX
SQ   Sequence 1352 BP; 469 A; 258 C; 236 G; 389 T; 0 other;
     actgtgtgca tggctgtaat aacagcagtt gcactttggg atcatgtctg ccagctcagt        60
     tccattggcc aaagtccctg caacagacaa cataactgag aagctgcaat tgtccagaat       120
     gactgcttaa gtaacagaaa gaaggtggaa gatctgagat gccactggta atggctttgg       180
     aattaccgtt aatgattaat tactgaatca ctattgcaaa tatatgacac gatgcctcat       240
     agacaacttc tatgtgaaaa tatgttttga cctttatact agaaatatgc aattataaaa       300
     cagttcttgt aagaactgta atgttcagtg tcttccacat gttcaacctg atgacagaat       360
     gaccagatca atggctgact gaccatacta gtgctggaac aaattaactg aataatgcat       420
     agtcccacag cttttttttt cataatgaat gaataaattg gggccctagg taacagatta       480
     gcttatgccc atttatctat ttcaatgcca ggcaattttc cacaaacaag catgcaagtg       540
     gccacaataa cattttccag agtttccaaa ctgatattga tcacaaacca aaaaataagg       600
     gaattttcca aacatcccat tagaaaaaaa cttatgactg aaaagcttaa atatcttata       660
     cattcagaaa tatgcaaatg tacatatccc actaaatttg aggcttcaaa atatatatta       720
     ttgcagttaa ttaaagtgga cctgtcaccc agacatgaaa agctgtataa taaaagtcct       780
     tttcaaatta aacatgaaac caaaattcat ttttatatta acacattcaa acccatttta       840
     aatgcattta aaaatcccag ctgttaatca tatactgcct gccctgcctc tatgccttag       900
     gcatagaggc agggcagaca attacttaaa ctttccattc agcactcaca ttctctcctc       960
     ttaacatcta attgtgtagc cagtgcatgg gcaagggcat caggtccccc attctggcac      1020
     atgcacaaga ttttggggtg aaagcacata cacaagattt tggggacaaa gcttgcctta      1080
     ttaacagtgc ccacaaaatg gcagctgcct ggctgtgatt gtatattacc aagactgaag      1140
     gaaaccaaga tttatatcat ttatatagta tgtgaagtta attttgctta aaggaacagt      1200
     aacatcaaaa aatgtaagtg ttttaaagta attaaaatat aatgtgctgt tgctctgcaa      1260
     aaaactggtg tttttgctac agaaaagcta ctatataaat aagctgctgt gtagccatgg      1320
     gggcagccat tcaagctgga aaaaaggaga aa                                    1352
//