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EBI Dbfetch

ID   AAMC01070857; SV 1; linear; genomic DNA; WGS; VRT; 7339 BP.
XX
AC   AAMC01070857; AAMC01000000; AAMC00000000;
XX
PR   Project:PRJNA12348;
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DT   18-NOV-2009 (Rel. 102, Created)
DT   18-MAY-2012 (Rel. 112, Last updated, Version 3)
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DE   Xenopus (Silurana) tropicalis XENTRscaffold_295_Cont70857, whole genome
DE   shotgun sequence.
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KW   WGS.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
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RN   [1]
RP   1-7339
RX   DOI; 10.1126/science.1183670.
RX   PUBMED; 20431018.
RA   Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA   Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA   Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA   Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA   Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA   Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA   Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA   Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA   Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT   "The genome of the Western clawed frog Xenopus tropicalis";
RL   Science 328(5978):633-636(2010).
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RN   [2]
RP   1-7339
RG   US DOE Joint Genome Institute (JGI-PGF)
RA   Lucas S., Shapiro H., Lindquist E., Tice H., Dalin E., Glavina del Rio T.,
RA   Bruce D., Barry K., Pitluck S.;
RT   ;
RL   Submitted (10-NOV-2009) to the INSDC.
RL   US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA
RL   94598-1698, USA
XX
DR   EMBL-CON; GL172931.
DR   GOA; F6UUA0.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR001723; Str_hrmn_rcpt.
DR   InterPro; IPR003079; ROR_rcpt.
DR   InterPro; IPR008946; Nucl_hormone_rcpt_ligand-bd.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   UniProtKB/TrEMBL; F6UUA0; F6UUA0_XENTR.
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CC   URL -- http://www.jgi.doe.gov/xenopus
CC   JGI Project ID: 2662311
CC   Source DNA and organism available from R. Grainger
CC   (rmg9p@virginia.edu)
CC   Contacts: Richard Harland (harland@berkeley.edu)
CC             Uffe Hellsten (uhellsten@lbl.gov)
CC             Daniel S. Rokhsar (dsrokhsar@yahoo.com)
CC   This is a draft assembly based on ~7.6-fold shotgun sequencing of
CC   an inbred Nigerian frog. As with any draft assembly it contains
CC   gaps and may contain errors, and users should exercise caution.
CC   ##Metadata-START##
CC   Organism Display Name :: Xenopus tropicalis
CC   GOLD Stamp ID         :: Gi00722
CC   Assembly Method       :: JAZZ
CC   Assembly Name         :: v4.2
CC   Genome Coverage       :: 7.6x
CC   Sequencing Technology :: Sanger
CC   ##Metadata-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..7339
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:8364"
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SQ   Sequence 7339 BP; 2370 A; 1346 C; 1311 G; 2312 T; 0 other;
     gtgtgccaga gcccttagtt cacaaaaaag aagcagataa tctcaaaatt acactcaaat        60
     tgctagacaa tagggttcag taaagctggc catacacttt acaattacaa tcctaccttc       120
     cactaacgtt cagggctgac tcatcagata tggaggtaaa aacaatagga attcttcccc       180
     tatctaacga ttcaacccta aatgcagctt ttgcttgggc accttcacca acaagatgat       240
     ccaccataca cacactgaat atcgtatgaa aacctctttt gttcgataat atcggtgtgt       300
     gtatggccag cattaataat gaaaagaaaa tgcttataaa gtggtagttc acatttttat       360
     taaatctcag tatgatgtag actgtgatat tctgacaaac tgcagttagt ctttaatttt       420
     tattttatgt ggtttttgaa ttatttaaca tctagttcag cattttttct gtaaggaatt       480
     ttagcagctg ccccctctta cttcttatta acttcctcac ttccaagtta agtcacataa       540
     cacattttct ttataaatga ataaattgag aacagtagtg gcttaatatt attttatatg       600
     acaataatct ttctttgttt ttatcaaaaa tactattgtc ctggtactga tcttggggag       660
     ataaaattca ctttcctaaa atttaatttt gcgatgaccc agtgtatgct gttttttgca       720
     ttaaacaaag aagtcaatgg gaattgtcgt aggcaaattc tagcaatcta caattcgagg       780
     tttaagaggt tttgaagggc tttttccatt tataagtcca caaagattga tagaaaaaat       840
     gtaaaatcta cagaaaatct gtggttttca tgttcttttt gttttcattc catattttca       900
     ttcgttggtg cttttaaaat ttggatcttt taataaatga ctagacattt gtagttttca       960
     tggaaatgag tttattcatg gtttctaaac ctctaaaacc atagaaaaac aaatgttgat      1020
     aaatctgcct ccacaaatta acctaaaagt gaactaccac tttaagactg actatagcaa      1080
     tgaacttaaa tcctaatgaa ctcaccaagt tctgccatag aaattgttgg ggatgtctcg      1140
     ccgttggtga aggaacagta tgggaagaaa gaagatgcag gagtatagtc acaaaggggt      1200
     tctggtttta tgccattaac atccaggcct gactgatcag gggatggctg gatatctaaa      1260
     taaaagctgt ttacagttga atcatttttg ctttcctctt ccatgtatcc acccaagtca      1320
     tcccgaagtt cagtgagacc atttggggtg agcccataac ctgcaggatt caaaggttct      1380
     gcctctcctg gaggctgctg gtggtctctc tgttgctgca tgcgatgttt ttgtacctct      1440
     gcatacaaac tgtccctctg ctttttggac atacgaccaa actttacagc tgcaaaatat      1500
     tacaacagta actgacaaga ttgtatactc aatcaacaaa ctctgtcaac taacagatcg      1560
     gtgcaggtaa ttgatttagc cattaacaac ttcattaaaa ttactaaatc ataacttacc      1620
     atcccgggac atgcccacag cgaggcattt ctgcagccga caatgctgac aacgattcct      1680
     gcttgtccta tcaatcaaac agtttttctg gcgtggacat gagtaagttg cattgctctg      1740
     ctggcttcgt cggaagaaac cctacatata aacaaatatt atgaaatgat gtacacacat      1800
     gggcacccat agctactacc ctccctaaca aactgaggtt ccctaagctc ttatactata      1860
     cagtgttcat aaaccataaa aaaatgttgg tgtagagaaa tactgaaagc aagaattagt      1920
     cttacattgt aggtcattat gagtgtttat aatgtttaga caagtaggca aaccagtagg      1980
     gatgcgccaa atttagtatc ctgccaaatc cccacttaat ataactgaac tgaggtacaa      2040
     taataaagtg caataaattg ataccattac aactcttcat gtaaaaaaaa tacgtttttg      2100
     cataccgcaa ctcatttcag ttcttacagt cagaagttag cagcctcata gatttcagta      2160
     aaaaacagtt tgtttttaag aaaaaaaatt gtttttgtgg aggcattgca gtgccattgt      2220
     tataaagagc agttagaatg aatcctgcat agaagcactg attaagctat ggcacaaata      2280
     tatctgaata ctagctgtca tgttttagca actgtgatgc cttagatgat acataacata      2340
     caacctgccc ttgtagtaat taatgaaaaa ttaagtactg cacatcacct acaatgttca      2400
     aaactaaaat tccagaaaac tgtacatact gcttttggag gaaaaaattg gttcagaaac      2460
     ctgatttatg caatatatat atatatatat atatatatat atatatatat atatatctcg      2520
     ctgtagtaca ctaccaaaac caaatgattt gcccaggtgc atccaaatgg tacatatatc      2580
     catatagaca agagtaccca caggatttat aaataagtga atacatttat ttggtcctgc      2640
     ctgaagagcc ttaaacattg acaataaatt atttcactta agtctcatga ggatagatat      2700
     atatatatat atatatatcc aaaaaaagac cagcaacaca gagttatatt ccaaaaagat      2760
     caatcgtgta aaaaacgcat gaacagcaac catgctaacc aaccccatgt tctatttatc      2820
     catagtgaac cagcaaataa attatcatta aagcatcaca cgccatgaag tgaccattgc      2880
     agttaagtgt gcaggaaatg ccgtaaagtg atcagtgcga taaattatca ttaaagtatc      2940
     acaagtgcag atctggtgct atttaaatta ataccccttt aaaataatca ttaaggttca      3000
     gtgaagtgat tcggcaaagc aatcattaaa aatctgtgaa acagtacaat acatcatgtt      3060
     aaaaatatac acattacagt gtcatgattg ctgcacactt tactgcaatg gtcacttcat      3120
     aaaatggcag ctgctatctt aagcaatcag agaaagcttc taaagctgtt tactcaggta      3180
     tgtaatggtt tctgcattat aaatatagtg ttctaggtgg cactaatgtg gcaaatctat      3240
     tggcagtaaa atgccaaaat gactttcctt ctcctttaag gacagggccc ctttgcagcc      3300
     tgtacctgcc agtgccaagt tccatgtcta aatgacatgc aagtaggtga taacatgata      3360
     gtttagtaca gtgatcccca acaagtggct cgtgagcaac atgttgctcc ccaacccctt      3420
     agatgttgct ctcagtgacc ccaaaccagg tagttatttt tgaattcctg acttggtggc      3480
     aagttttgga taaataaaaa caagatttac taccaaataa agccttctgt aagttgatag      3540
     tgtgcataga ggctacctaa tagccaatca cagcccttat ttggcacctc catgaacttt      3600
     tatggtgctt atgttgctct ccaagtcttt ttacatttga ctgtggctca cgagtaagaa      3660
     aggttgggga cccctggttt agtaataggg taagattggg gctataactt tcttgacaca      3720
     gggctgctga atctgctgtt tagtgaagtt ccctgtatat taaagaaaca gtaacattaa      3780
     ttattaacat aaaagtcctc aactcctact aaaggaacag taacacatta ccctgcaatg      3840
     ttaaaactgg tgtgtttgct tcagaaatac tactgtagtt tatataaata agctgccatc      3900
     tagccttggg ggtaattttt aatatgagga aaaaatgaga aaaaggcaca gataacatag      3960
     cagaatagaa cgcgcacacc caaataaata taaagaggtg ctattcccta aggaggatac      4020
     ccacgaacag tccccaaata acaaacataa taataataaa taattcacat gggggaatac      4080
     actcttaaaa aacaaaaatt atgcttagat tttgtaactc aataaacttg tgttttttaa      4140
     aagtatgcat tcccccccta tgtgaattaa catagcagat aggatcgcta aaaatacaag      4200
     tggtttagat ttctacataa gagctaaaac cactttattc tacagttacc tgttatctgc      4260
     aatctaacct gtgccattta gcaatctttg gaatcttaag tgtaattaaa aaaaaaccct      4320
     ttaaacatta aataattgcc ttcaataagg attaattgta gtttagctgg gattaagtat      4380
     tattattgca aaaaaaagta aatcattttt gggatatcaa gcaaaacatt ttgtgtacaa      4440
     aacagatcct ttacaaggat taaagtataa gaaacagcag acaaagggtg ccttatgcag      4500
     tgtaaggaca aatgggggtt gcctatgtac agcaagtgtg attctatact tggctattag      4560
     ttggtgtagc acattaacta ctgtgaagca acaccttcta ccagtatagg caaaaacata      4620
     tatatatact ggaacaagga cagcactcct aggatttatc taaatcctag gagtgctgtc      4680
     cttattccag tgcatttttt tgtactagca cccaggtttt gttgctgcaa atggtgtgca      4740
     ccctatggac tattttatat atatatatat ataaaaatat agaatgtctg cactcacgaa      4800
     acagaggaat atagctgcct gggtgcagtc attaagtatt cataaacacg tttcatccaa      4860
     tgaggaagcc acagccgaaa catcagttta ttgctttgaa taaagactat tttttgcaca      4920
     taagtcctgt gagtgcggtt tcctcgttgg atgatacgta tatatatata tattatagtg      4980
     tatttatatt atagtattcc cttttgaatt tgttttactt agcattagtt ctgttcttac      5040
     tctaagcaca tctcatacct agagttggaa gacatagcta tgtttggcct ctctgtgttc      5100
     taatgacaat tcccaactaa tgaatggact cctggagttc attaccatac ccgattcctc      5160
     ttctgtatac acatatgtct taattagatg ctcattggct gtttaattac aaggaagcag      5220
     ctgccagctg ccaggccttt ctgtaccggc gggcacgctg agaagtctcc actccagtgg      5280
     gtgacaagga gactctccga aagctatgtg atttatggct ggctgcggaa gaatcctctg      5340
     gctcattaat ctctcaaata ggggctgcaa ttaaaatgta gtgctttttc tgacggcttc      5400
     tctcccattg ccgaccaaaa ggacatttcc tattcccaat ggtgaatgga ataatccaag      5460
     cagtgctcta aatggggaat ttccagatta tgtgtgaata tgtatgcata taaatgcatt      5520
     tccatgcaca gaactgaaca agtatagtaa cagcaatgtc tgtgtatatg taatatatat      5580
     atatatatac atacaccagc gtgtagtttg cactccattg gtattagtgc ctgggtgcca      5640
     gaataaaaaa aaactatatg atactttata aacaggtatg ggacctgtta ttcagaattc      5700
     taggaacctg gggttttcca gggggtcttt atataatttg gatcctaata ctttgtgtct      5760
     attaaaatat catttaaata tgaaataaac caaataggac tgttttcctt caataaggat      5820
     taattatatc ttagttggga ttaaatatgt gctaatgttt tatttttatt tattttattt      5880
     ttttatttat tttataaaga gagaagtagg aaatactttt gaaactttga attaattaaa      5940
     aaaaaatgga gtctatagga gatgccttcc cgtaatacag agctttctgg atctatatat      6000
     atatttttgg aaatcggcca tgaagggggg gtcacggtgg ctcagcagtt aacaagcaca      6060
     ccttgcatac ctatggtttt cagatttttg ggagttaaat ccaccatttg ctcttcagta      6120
     ttctttcttg tcacatatat ttaataataa gcctaggaat aacatatctt agatttgaaa      6180
     acttcctcaa gcaccacttt ctgtggagtg gcaaatagca agtagggggt gactgcctca      6240
     ggaggcaggg aggtgcacac tcctatagtg atccaagtaa ctgaaatctc actctgactg      6300
     tagtgctgtc taacccatcc cactcacaat tatcataact tccttccaac agcatacata      6360
     gcaataacac atcatagcat cattttcccc aagtagaatt tatagctata gaatagcttc      6420
     cttcatttgt ctgtgaggat tctatccatt ttttacattt ttactagtga cgcaaaactc      6480
     tgatcagtga gtctgaactg tattggtaga tctatattgg ttgtacggta aaggcatgac      6540
     acactttagt tttgtaattt gtttgcacag gtagctacaa ttctccaaac tgattatatc      6600
     tatgtcattg ccagaatatt gtcatcaaaa tattcatgtg gcacttgtaa cagtattagg      6660
     cattattaag cattatgtcg ctcaaggttt taatcttaaa ggagaactaa acctagctag      6720
     aaatgacata ttatatatat tacatatact aaactgactg aactagctta aagctttagc      6780
     atttctatag tagtaatgat atagatcttt acaggtgtcc catcttggat tctgttagaa      6840
     ctgtctggga cagtgcacat gtccagtgcg cattgagcag ctgttgggaa cctttgctta      6900
     ggggttctcg caaattatca agcaaaaagt gaggctggcc agtcatataa actgatgcta      6960
     cagggctgat tattaaattc tgatgctaac tgcactggtg tcagagctgc catgtaatgt      7020
     gaatctgaat gaattactaa tcagccttat actgttacat ttatattcta tatatatata      7080
     cagtatattg tgacatttat attctataca tacagtatat tgtacgttgg tccctaagct      7140
     cagtaagtga caacagcaca gaccatgggc agtgaatcag tagaaaagaa gatggggagc      7200
     tactggggca tctttggaga cacagatctt ccctgccact gggctgtggt tgccttgggc      7260
     tggtacagaa gcccaaaaca taatgaacaa tgtttctggc ctatttcttt agtaggcttt      7320
     agttttctgt taatcctga                                                   7339
//


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