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EBI Dbfetch

ID   AAMC01070856; SV 1; linear; genomic DNA; WGS; VRT; 2122 BP.
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AC   AAMC01070856; AAMC01000000; AAMC00000000;
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PR   Project:PRJNA12348;
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DT   18-NOV-2009 (Rel. 102, Created)
DT   18-MAY-2012 (Rel. 112, Last updated, Version 3)
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DE   Xenopus (Silurana) tropicalis XENTRscaffold_295_Cont70856, whole genome
DE   shotgun sequence.
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KW   WGS.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
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RN   [1]
RP   1-2122
RX   DOI; 10.1126/science.1183670.
RX   PUBMED; 20431018.
RA   Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA   Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA   Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA   Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA   Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA   Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA   Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA   Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA   Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT   "The genome of the Western clawed frog Xenopus tropicalis";
RL   Science 328(5978):633-636(2010).
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RN   [2]
RP   1-2122
RG   US DOE Joint Genome Institute (JGI-PGF)
RA   Lucas S., Shapiro H., Lindquist E., Tice H., Dalin E., Glavina del Rio T.,
RA   Bruce D., Barry K., Pitluck S.;
RT   ;
RL   Submitted (10-NOV-2009) to the INSDC.
RL   US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA
RL   94598-1698, USA
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DR   EMBL-CON; GL172931.
DR   GOA; F6UUA0.
DR   InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
DR   InterPro; IPR001628; Znf_hrmn_rcpt.
DR   InterPro; IPR001723; Str_hrmn_rcpt.
DR   InterPro; IPR003079; ROR_rcpt.
DR   InterPro; IPR008946; Nucl_hormone_rcpt_ligand-bd.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   UniProtKB/TrEMBL; F6UUA0; F6UUA0_XENTR.
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CC   URL -- http://www.jgi.doe.gov/xenopus
CC   JGI Project ID: 2662311
CC   Source DNA and organism available from R. Grainger
CC   (rmg9p@virginia.edu)
CC   Contacts: Richard Harland (harland@berkeley.edu)
CC             Uffe Hellsten (uhellsten@lbl.gov)
CC             Daniel S. Rokhsar (dsrokhsar@yahoo.com)
CC   This is a draft assembly based on ~7.6-fold shotgun sequencing of
CC   an inbred Nigerian frog. As with any draft assembly it contains
CC   gaps and may contain errors, and users should exercise caution.
CC   ##Metadata-START##
CC   Organism Display Name :: Xenopus tropicalis
CC   GOLD Stamp ID         :: Gi00722
CC   Assembly Method       :: JAZZ
CC   Assembly Name         :: v4.2
CC   Genome Coverage       :: 7.6x
CC   Sequencing Technology :: Sanger
CC   ##Metadata-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..2122
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:8364"
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SQ   Sequence 2122 BP; 650 A; 443 C; 433 G; 596 T; 0 other;
     agaggatatt tatattataa tacccaacaa tacctgctgc actataacag gggaaaaggt        60
     gctttaaata ttggcgtggg acactaattt atagtgttat gtataagtaa gtttggcagt       120
     aaactaagaa atttgcccta tgcccaagaa aaatatagta acctgataac agggtttgag       180
     acaacactca tttgtaagtg acaggagtac caactaaagc tggccataca ctgtaagatt       240
     tgctcggctc gctaggtcgc caaacaaact gatattactc ctggtattcc cacttaaagt       300
     ggccaatatt gggggaaata accatgggac taggagccag tcgaagctag aaccgcatca       360
     ataagctaat gtgacctcga accaacggta aaatcaaacc tgttcaattg actttcggcc       420
     atatgtaaaa agtgtaattc acaacaaggg aatctcaata gaatggctgg gccagcagct       480
     accaaatatt aagggacata tttattattg atcatgtatc caggtttttc ctggcaaaat       540
     ataattccct aaaagattta tattgtcttc tactgtacca actgttatcc ttgtaacttg       600
     acgataaaag aaaaagaatt acgaaataat tgccctacag attgcctgca atccctaaaa       660
     gtctaaaaaa ccattcccaa agagtacagc agcaatgggg caaaacaaga caaatgtgat       720
     caatactgtt gcaaagctct ttacaggttt ttggcactct gccttctatc tgtgcccctt       780
     accttgctct ggtagttatc aatctcttcc tgaaggaaag tctgccacat aagctgctga       840
     agctcttccc gtaaatactg gcaagtctcc atgtgggact tagagatatt ctgagcaaga       900
     tgttctgagg cagaaagaga gaggggaaaa taaagaaagg taagaatcta caaatgcatt       960
     tcaagctcta caaatactta taactagtgg tgcctatact gtgagctcaa atatttcttg      1020
     gaatatgaat taaaaggcca cccaatacct ccagatcaat tatattttct cattctttca      1080
     ccacaggatt taatgagatt attggcatac cactgtgaat aataggatta ctttcttccc      1140
     ttaaaaacat tgccacaaag tggggtctca ctggaagaaa aacaatgtga ctctagggtt      1200
     attccatggc attcacacag ctgaaattgt tacatgtccc ttgagcactg gctctttgct      1260
     ggcaaatgtc acttcctcct gaatattact agcgaaataa atcacatttt gtttaacatg      1320
     ctaagtttca atcatgtttt aagcaaaaat atcacttcct actcatcact cactaaaatg      1380
     tcattagttt ggacagaggc gttttccctg tgtatctgtc ctgctgtctg taatgtttct      1440
     ctcctttttc actaggagaa agtgtctctt aaggtggcca tctgtgggcc gattgtagct      1500
     gccgataacg gtcccttaga ccaattaggc agcttattgg cccgtgtagg ggcacaaacg      1560
     acaggcctgc ctaccgacat ctggcctgga atcacccaga tatcgggcag gttaaaaaat      1620
     ttagttggat cggggactgc attggctcgt tgatgcagtc cccaaaccga ttgtgcttat      1680
     taccggcgtt tgtaaacctt aagggctctg gcacacggtg agagtactca gctgctgatt      1740
     tgacagagtg ttgctgattg agtatacaat cttgtcagtt actgttgtaa tattttgcag      1800
     ctgtaaagtt tggtcgtatg tccaaaaagc agagggacag tttgtatgca gaggtacaaa      1860
     aacatcgcat gcagcaacag agagaccacc agcagcctcc aggagaggca gaacctttga      1920
     atcctgcagg ttatgggctc accccaaatg gtctcactga acttcgggat gacttgggtg      1980
     gatacatgga agaggaaagc aaaaatgatt caactgtaaa cagcttttat ttagatatcc      2040
     agccatcccc tgatcagtca ggcctggatg ttaatggcat aaaaccagaa cccctttgtg      2100
     actatactcc tgcatcttct tt                                               2122
//


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