EBI Dbfetch

LOCUS       NM_001243167            2850 bp    mRNA    linear   ROD 17-APR-2013
DEFINITION  Mus musculus predicted gene 13288 (Gm13288), mRNA.
ACCESSION   NM_001243167 XM_001000025
VERSION     NM_001243167.1  GI:341926165
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   2  (bases 1 to 2850)
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928605.22.
            On Jul 30, 2011 this sequence version replaced gi:309268160.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK031317.1 [ECO:0000345]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2850              AL928605.22        167098-169947
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4"
     gene            1..2850
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /note="predicted gene 13288"
                     /db_xref="GeneID:668208"
                     /db_xref="MGI:3701985"
     exon            1..2850
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /inference="alignment:Splign:1.39.8"
     STS             223..1307
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /db_xref="UniSTS:491938"
     misc_feature    560..562
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /note="upstream in-frame stop codon"
     CDS             656..1204
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /note="interferon zeta family Ifnz member"
                     /codon_start=1
                     /product="interferon zeta-like precursor"
                     /protein_id="NP_001230096.1"
                     /db_xref="GI:341926166"
                     /db_xref="CCDS:CCDS57286.1"
                     /db_xref="GeneID:668208"
                     /db_xref="MGI:3701985"
                     /translation="MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAEL
                     RSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLKQVLHLFDTEASRAAWH
                     ERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWE
                     IVRVQLQVDLPAFPLSARRGPR"
     sig_peptide     656..718
                     /gene="Gm13288"
                     /gene_synonym="OTTMUSG00000011289"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 tccctgctca gcagagctcc tgagaggaga ggggcaagac catactgtct gtcctctctc
       61 tggaactgtc tgcctgttgg ggcccagctc tcctctctgc caactccact tccttcttct
      121 ccactcgcgt tagagagctg gaagggtctg gcgggccacc caaacgcacc aagatgcgaa
      181 ccaaacaaac gaaaggaaac cgaaccaaag gagaccaaac caaacccagc ccagccaaac
      241 caaaacgctg ctctctgggc tttggagcct tcccggttcc ccgaaaacat gtcccctggc
      301 ccaccaattc cgtctgggtt caattctcaa ggcgcgatgg atggcgtaca gtcctgtacg
      361 cgaaggggcc cgggagagag gcaggagaca ctccctgcct gcccggagtc gcgcgctgag
      421 cggggcgaac ggcctccgca ggcgcccgct gctgccctcc ggtggcccgc gccctctgct
      481 gctgctcctg gcctcagaag tcgcgtccag cgtccagcgc agcgcaggca gtcagcgagc
      541 aagagcccga agctccgagt gaactattaa agcagcaaac tccaggctca atgggaaggc
      601 ggccttgccc tcgcgctccc cctgcaggcc agccccgcaa tcgtcaggct tcagcatgct
      661 gcctgtgcat ctattcctgg tgggaggggt gatgctgagc tgcagcccag ccagctcact
      721 tgattctggt aaatctggga gcctgcacct ggagcgcagc gaaaccgcgc gcttcctagc
      781 agagctccga agcgtgccgg gtcaccagtg cctgcgggac aggaccgatt tcccatgtcc
      841 ctggaaggaa ggaactaaca tcacaccgat gactctggga gaaaccacca gttgctactc
      901 ccagaccctc aagcaggtcc tccacctctt tgacacagag gccagcagag ctgcctggca
      961 cgagagggcg ctggaccagc tactatctag cctgtggcgt gagctgcaag tgctgaagag
     1021 gccaagagag cagggccagt cctgtccact gccttttgcc ctggccatcc gcacctactt
     1081 ccgagggttc ttccgctatc tgaaggcaaa ggcacacagc gcttgctcct gggagatcgt
     1141 cagagtccaa ttgcaagtgg accttccagc gttcccactg tctgcgagaa gaggcccaag
     1201 atgaggagaa gccccgtgca ggaatctctc tgctctcgtg acaccacgct ccctctctcc
     1261 attcaaagca gacacacgga ttcggattca gcaccaacag gcgaaatggg cgtgcatcga
     1321 ccaagaacat cgagttcttt atgtcttccc tgccagaggc cccgaagcat cctactgtac
     1381 atcatacact gcgaaagatg tttgaaagaa aacctgtgct cttgcatttg aggtggcttc
     1441 tgaataaatt gatgatctcg gttttccttg ggaggtttcg atcacagatg ggggatgccc
     1501 atgggccacg ggggttggaa aacgtgcctt gttgcagcaa ggctctcttg ggctgttcgg
     1561 tgttagaacc attctctctc ctgtcatggg cttctggtta gcttcttgta acctgggaac
     1621 tccttaatct cagactttgc ccggtctcag gttttctgtt tgtttgtttg tgtgtgtgtg
     1681 tgttttttga aaatctccct tggaaggaag ttactccaga ggttgatgaa cctctttgct
     1741 tgatctttgc atcttgaaaa gagaaaattc tccttaaaaa aaaagctata ttctcctttc
     1801 gttgaagaca gctttatgtg cacaaaattc tcaaaagtct cctttgatgc cagtcttttt
     1861 agagggtagg aggtggacct gaaatattaa accctctggc tctataggcc tcaggttggg
     1921 agagaggaat ttcccatctc atgtttcatc aagatggaag ccttttgtcc taggttccat
     1981 acaagctgct aactatagtg tttgtttcaa aagttccttc tctctaaaag tcccttcttt
     2041 tttacgtatt atcagcagag cgtcctaccc ctttggagaa gtgattagca tgcatcaata
     2101 tcaatctcac tgggccctta gagagaacac agacgtaggt aaagcatcat gagagattat
     2161 taggatagcc cactgacacc tggagactgt gtagcaccca caagcaccaa ggagatctgc
     2221 agcacgttgg aactgaggag ttagtgtggc ttctgaggag gatgggagtt ttcacttcag
     2281 ttgggaccag cctggtctct gcctgtggtc agagaacaac ttgttctagc cctgttactt
     2341 gatcaggact agggtttaca tagggaagga ctttgtctct agacttctct cctctccacc
     2401 cttgtaaatg gtctagtgaa ggctcagggt gacatagatg cattctaaat tgaacttcat
     2461 tttggctgat gccttaaatt atgaaaattg tccatcttta tgtagtactg tgtgataatt
     2521 catacatgcg cacacactgt caagttttat acactttaaa catggatctc ctcaaacact
     2581 attttctttt tgtagataaa acactgaaaa ccctttctca caattttaaa gctgactatg
     2641 gcatcgtgaa cgtctttttg taatcaacat gcagcaacac ccatgatcct ccttcctgag
     2701 aggatctcag cccctagaaa ccattttgga ggacttggta gtggtgtaag cttggctgac
     2761 cgtgtgatta cataaaatct tcccatttga ccacttctat ttttgtcgtt gcttgtatca
     2821 tcaacatttt tcaatataaa taattatacc
//