Dbfetch
LOCUS NM_058808 3367 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans HTH La-type RNA-binding domain-containing protein (larp-5), mRNA. ACCESSION NM_058808 VERSION NM_058808.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3367) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3367) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3367) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3367) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_058808.4. FEATURES Location/Qualifiers source 1..3367 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..3367 /gene="larp-5" /locus_tag="CELE_T12F5.5" /db_xref="GeneID:171942" /db_xref="WormBase:WBGene00004147" CDS 152..2434 /gene="larp-5" /locus_tag="CELE_T12F5.5" /standard_name="T12F5.5a" /note="Confirmed by transcript evidence" /codon_start=1 /product="HTH La-type RNA-binding domain-containing protein" /protein_id="NP_491209.3" /db_xref="EnsemblGenomes-Gn:WBGene00004147" /db_xref="EnsemblGenomes-Tr:T12F5.5a" /db_xref="GeneID:171942" /db_xref="GOA:O44760" /db_xref="InterPro:IPR006630" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:O44760" /db_xref="WormBase:WBGene00004147" /translation="MDTFELDSDAFYICTEVSPRNFVVQKAIQIDKSQIERMVGKFDG KVAVEKTSSPGSSVGTSNAHSPGTSPSTSASGASGIPQPPPLPYWFNRECKSSLMMIG PQPPGPSSGMSMPSSSSTNQFVPAVPPPPPLSREEIKQLLKNQLEYYFSRENLSSDRY LKCQMDSDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTNVELDEKFEKVRAITKRK VMLIREIPETHREEVVKLIADGPPYTDLQYGVNDGWYVTYENELDAQVAYVAVQHRKN EITQKQVCARIKTCGPSTFAPPPEETPHSENGQMTTLGNGEQGTVHLRELGQTLSDYG FVPVATYRPGDPISSHFEYITPTFRFSGNSLSYNPPMPPVPPLPPQHHQQHQQQQQQQ QPPLLQNTPQPYYYGSSVSTTPRNYDEMSTASSNSTHTTTSNYNNRNGSRNGGNQYYE SRSSFSNSNEWRSRGGGNGGRFQNNYSENNGRQSNGSNGRWRGNNRNGATTNGYGYQQ HNNRQNHYQNGQQRENGENGHHNHYQNGQSSNSWWSGNDGQTRQRKQQHNGYNNRPTV SSSSSSSTSSKYFSPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDLPPPPVWPAPNF DRRRKSSETSFTTNTTTNTLTPSTPVTPPVLRPAFSESKAPQEPSKPVETKENNKPAL TDDFPLPEPLPQKPKIETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETA FPSLPKKVEPVKPPQKPTFR" ORIGIN 1 ctggccactg ctgctgcgcc cgtcgcccct ctctacgctc cttcttctcc accacccact 61 tctccattcg cttccataag tcggatgacg tgatactgac ttcttctcct tcgttcacca 121 ttctccacgg cgtcgacgtc ccttttcgga gatggacacg ttcgagctcg actcggacgc 181 cttctacatt tgcacagaag tgtcaccgcg aaactttgtc gttcagaagg caatccaaat 241 cgacaagtca caaattgaaa gaatggtggg aaagttcgat ggaaaggtgg cagtggagaa 301 gacatcttca ccaggctcct ctgtgggaac atctaacgcc cactcaccag gcacgtcacc 361 gtcgacatca gcgtcgggtg ccagcggtat tccccaacca cctccacttc cttattggtt 421 caatcgtgag tgtaaatcat cactcatgat gatcggcccc cagccgccgg gaccttcttc 481 ggggatgtcg atgccctcat catcatcaac gaatcagttt gtgccagcag ttccaccacc 541 accaccgttg agtcgtgaag agattaagca gctgttgaag aatcaactgg agtactactt 601 ttccagagag aatctgagct cggaccgata tttgaaatgc caaatggatt cggacaacta 661 tgtgccgatc aatgtccttg ctggcttccc gaaaataatg cggctgacta cggatgtcga 721 tttgattgtg gaagcgctga aagaatcaac aaatgtggaa ttagacgaaa agtttgagaa 781 ggtcagagct atcaccaagc ggaaagtaat gctaatccga gaaatcccgg aaacgcatcg 841 agaagaagta gtcaaattaa tagcagatgg accaccgtac actgatctac agtatggagt 901 taatgatggt tggtacgtga cctacgagaa tgagttggac gctcaagttg cctatgttgc 961 cgtgcaacac cgtaaaaatg aaataacaca gaagcaagtt tgtgcacgta taaaaacttg 1021 cggtccttcg acatttgctc ccccaccaga agagacgcca cattcagaga atggacaaat 1081 gacgacactg ggcaacggcg agcagggcac agtacatctt cgagagttgg ggcaaacgct 1141 ttctgattat gggtttgtac ctgtggccac ttaccgacct ggagacccga tttcgagcca 1201 cttcgagtac atcacaccga cgttccgctt ctctggaaac agcttgtcat acaatcctcc 1261 gatgcctcct gtgcctcctc taccaccaca gcatcatcag caacatcagc agcagcagca 1321 gcaacaacaa ccacctctgc ttcaaaatac tccacaacca tattactacg gatcaagtgt 1381 ctcgacgacg ccacggaact atgatgaaat gtcgactgcc tcgtcaaact ccactcacac 1441 cacaacatcg aattataata atcgcaatgg aagcaggaat ggtggaaatc aatattatga 1501 gtcacgtagc agcttctcga attcaaatga atggcgttct cgtggtggtg gtaatggtgg 1561 aagattccag aataattata gtgaaaataa cggacggcaa agtaatggga gtaatggccg 1621 atggcgtgga aacaatcgaa atggagcaac gacgaatggt tatggttatc agcaacataa 1681 caatcgacag aatcattatc aaaatggtca acaacgtgaa aacggagaaa atggacatca 1741 taatcattat cagaatgggc aatcttccaa ttcttggtgg tcgggaaatg atgggcaaac 1801 ccgtcaacgt aaacaacagc acaatggcta taataatcgt ccaactgtat catcatcttc 1861 ctcatcgagt acgagctcca aatacttttc tccggatgct gtcgaaactc cgactaactc 1921 tggatcaagt acacctccac aaacatcggt tcgcaatccg aaatatcatg ttcctacacc 1981 aacggatctt ccaccgcctc cagtatggcc tgcaccaaac tttgaccgga gaagaaaaag 2041 ttcggaaaca tcattcacaa cgaacacgac aactaataca ttgacaccat cgactccagt 2101 cactccaccc gtgttgcgac cggcattttc tgaatctaaa gctccgcaag aaccatcaaa 2161 accagtggaa acgaaggaaa ataataagcc agctctaact gacgattttc cattgccaga 2221 acctttgccg caaaaaccga aaattgagac gaatcatcat tcggctgtgg agaaggatgc 2281 ggagaaaatc aaagtgcgct ccccgcccgt cgttgtagct tcttctccag cacctgctgc 2341 tccatcacca ttttcctttg aagaaactgc tttcccttca cttccaaaga aggtggaacc 2401 tgtgaagccg ccacaaaaac cgacgttcag gtagatgatg acgacgttgt catttctatc 2461 cgacaatcgt tattatcgtt gtcatgtgat ttgtgttgtg attggtattg tgccataaaa 2521 aagttccgta gctgctggtc ggctgaaaaa gatcaaacaa ctcgttccgg agaaaaagac 2581 gtcgtacgct gaaaaggcac aacaatatca gaacaatcac aaaaaatgaa ttaattaatc 2641 aaatttttta tcattccaca cacacacacc taaataggcc ttcgtgtatc cttctagtct 2701 gcttttccac attcttttcc cctagtttta tgaacctatt caaaaactgc cccaaacata 2761 attaacattt ctcttttctt gactatcaat caatcaacac aaaaaccaac caactctctt 2821 cccatcgacg tgtgatccaa tccatccccg tttctgtagt tattttccat atcgaacacc 2881 tcattgtctg tcctatctct tgatccgtgt agtatttcaa cttttctgtt ctcggtcatt 2941 ttcccagcaa cacacaaaaa aatcaaatca tcaccaattt tcacagcctc cgaaactgct 3001 ttactcgtag attgtttgtt ttttccgtcc ccccattttt cacttgtttc ctgtttaata 3061 tatattttcc cctttcgatt attgcgttgc caaaccgaac gtgctttacc gcatttcaat 3121 tgtatttttt tccgtttttc aaaaaccccc ctaatcattc ccccaccacc acaaaaacca 3181 tttctcggga ctcccgcatt tttacaattt ctggtatctg ggaccttttt ggagagtatt 3241 ataaatattt aattgggatc tctaataatt ctgtttcact tgttttagtc attgagctgg 3301 tttattcgat gaattcaaat tcgttgtcag aaatgggaaa caataaaaaa ttttgacaaa 3361 gtaggta //