Dbfetch
LOCUS NM_001313065 2142 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans PAS domain-containing protein (hif-1), partial mRNA. ACCESSION NM_001313065 VERSION NM_001313065.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2142) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 2142) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2142) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 2142) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Apr 15, 2020 this sequence version replaced NM_001313065.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2142 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene <1..>2142 /gene="hif-1" /locus_tag="CELE_F38A6.3" /db_xref="GeneID:180359" /db_xref="WormBase:WBGene00001851" CDS 1..2142 /gene="hif-1" /locus_tag="CELE_F38A6.3" /standard_name="F38A6.3f" /note="Confirmed by transcript evidence" /codon_start=1 /product="PAS domain-containing protein" /protein_id="NP_001299994.1" /db_xref="EnsemblGenomes-Gn:WBGene00001851" /db_xref="EnsemblGenomes-Tr:F38A6.3b" /db_xref="EnsemblGenomes-Tr:F38A6.3f" /db_xref="GeneID:180359" /db_xref="GOA:A0A0K3AXG6" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR013767" /db_xref="InterPro:IPR035965" /db_xref="UniProtKB/TrEMBL:A0A0K3AXG6" /db_xref="WormBase:WBGene00001851" /translation="MERRRETSRHAARDRRSKESDIFDDLKMCVPIVEEGTVTHLDRI ALLRVAATICRLRKTAGNVLENNLDNEITNEVWTEDTIAECLDGFVMIVDSDSSILYV TESVAMYLGLTQTDLTGRALRDFLHPSDYDEFDKQSKMLHKPRGEDTDTTGINMVLRM KTVISPRGRCLNLKSALYKSVSFLVHSKVSTGGHVSFMQGITIPAGQGTTNANASAMT KYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHPADMMIVSKS MKELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKGQYVICVHYVLGIQGA EESLVVCTDSMPAGMQVDIKKEVDDTRDYIGRQPEIVECVDFTPLIEPEDPFDTVIEP VVGGEEPVKQADMGARKNSYDDVLQWLFRDQPSSPPPARYRSADRFRTTEPSNFGSAL ASPDFMDSSSRTSRPKTSYGRRAQSQGSRTTGSSSTSASATLPHSANYSPLAEGISQC GLNSPPSCSIKSGQVVYGDARSMGRSCDPSDSSRRFSALSPSDTLNVSSTRGINPVIG SNDVFSTMPFADSIAIAERIDSSPTLTSGEPILCDDLQWEEPDLSCLAPFVDTYDMMQ MDEGLPPELQALYDLPDFTPAVPQAPAARPVHIDRSPPAKRMHQSGPSDLDFMYTQHY QPFQQDETYWQGQQQQNEQQPSSYSPFPMLS" ORIGIN 1 atggaacgcc gtcgtgaaac atcgagacac gcggctcgtg atcgtcggtc taaagaatcg 61 gatatatttg atgatctgaa aatgtgtgtg cctattgttg aagaaggtac cgtaactcat 121 ctagaccgta ttgcacttct tcgtgttgcc gccacaattt gtcgactgcg caagacagcc 181 ggtaatgtat tggaaaacaa tttggacaat gaaatcacaa atgaggtatg gactgaagac 241 accatcgccg aatgcttgga cggctttgtt atgattgttg acagtgattc ttcaattctt 301 tacgtcactg aaagtgttgc aatgtattta ggattaacac agacagattt aacaggtcga 361 gcccttcgag actttcttca tccatccgac tatgacgagt ttgacaagca atcaaaaatg 421 ctgcacaagc cacgtggcga ggacacagac accaccggca tcaacatggt gcttcgaatg 481 aagacagtca tcagcccacg tggaagatgt ctgaatttga agagtgcttt gtacaaatca 541 gtgtctttcc tggttcattc aaaagtttca actggtggac acgtgtcatt catgcaaggt 601 atcacaattc ctgctggaca gggtacaact aatgcaaatg catctgcaat gacaaagtac 661 acggaaagcc caatgggtgc attcacaact cgtcacactt gcgacatgcg catcactttc 721 gtttcggata agttcaatta catcttgaaa agtgagctga agactctcat gggcaccagt 781 ttctacgaat tggtacatcc agccgatatg atgatagtat caaaatccat gaaggaactt 841 tttgccaaag gacacatccg taccccgtat taccggttga ttgctgcaaa tgacacactt 901 gcctggattc aaacagaagc tactacaatc acacatacga cgaaaggaca aaaaggacaa 961 tatgtcattt gtgttcatta cgttctcgga atccaaggag ctgaagagtc attggtagtt 1021 tgcactgatt caatgccagc tggaatgcaa gtagatatca agaaggaagt ggatgataca 1081 agagactata ttggaagaca acctgaaatt gtggaatgcg tcgattttac tccattgatc 1141 gagccagaag atccatttga tacggttatt gagccagtcg ttggtggaga agaacctgtt 1201 aagcaggctg atatgggagc acgtaagaac agctacgatg acgttttgca atggcttttt 1261 cgcgaccagc caagctctcc gccgccggca cgctaccggt cagcggaccg cttcaggaca 1321 accgaaccgt cgaatttcgg ttccgctctg gcctcgccgg acttcatgga ttcgtcatct 1381 cgtacctccc gaccgaagac atcatacgga cgaagagcac aaagtcaggg aagtcgaaca 1441 actggatcgt cttccacgtc agcatcggcc acattgccac acagtgccaa ctactcgcca 1501 cttgcagagg gcatctcaca atgtggactt aacagtcccc cgagttgcag tatcaaatct 1561 ggacaagtcg tgtacggaga cgctcgatct atgggacgta gctgcgatcc gtccgattcg 1621 tcacgacgct tttccgccct ttcaccatca gatactctca atgtgtcgtc cactagaggc 1681 atcaacccag tcatcggaag caatgatgtg ttctccacta tgccttttgc cgattctatc 1741 gccattgccg aaaggatcga ttcgtcgcca acattaacct ctggcgaacc aatactttgt 1801 gacgatcttc aatgggaaga gcctgattta tcgtgcttgg caccattcgt tgacacttat 1861 gatatgatgc aaatggacga ggggttacca ccagagcttc aagctcttta cgacttgcct 1921 gactttacac ctgcggtacc tcaagcccca gctgctcggc ctgtgcacat tgacagaagc 1981 ccaccagcga agcgaatgca ccaatcaggt ccctcagatt tagattttat gtacactcaa 2041 cattatcaac cattccaaca agacgagaca tattggcaag gacagcaaca gcaaaatgaa 2101 caacagccta gttcttattc cccatttcca atgctctctt ga //